Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- cytosol 3
- nucleus 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| GSMUA_Achr2P05120_001 | Banana | cytosol | 55.91 | 60.7 |
| GSMUA_Achr4P04220_001 | Banana | nucleus | 56.99 | 59.11 |
| GSMUA_Achr4P04150_001 | Banana | cytosol | 56.63 | 58.74 |
| GSMUA_Achr9P22440_001 | Banana | cytosol | 52.33 | 57.94 |
| GSMUA_Achr4P11450_001 | Banana | cytosol | 54.84 | 56.88 |
| VIT_04s0008g05850.t01 | Wine grape | nucleus | 50.9 | 52.01 |
| GSMUA_Achr9P13270_001 | Banana | cytosol | 50.9 | 51.64 |
| GSMUA_Achr3P04600_001 | Banana | nucleus | 44.8 | 51.02 |
| Solyc11g045130.1.1 | Tomato | cytosol | 49.82 | 50.73 |
| PGSC0003DMT400036620 | Potato | nucleus | 49.82 | 50.73 |
| Solyc03g117030.1.1 | Tomato | nucleus | 49.46 | 50.37 |
| PGSC0003DMT400058833 | Potato | cytosol | 49.46 | 50.37 |
| PGSC0003DMT400073328 | Potato | nucleus | 48.75 | 49.82 |
| KRH61689 | Soybean | nucleus | 48.75 | 49.82 |
| VIT_09s0070g00060.t01 | Wine grape | nucleus | 48.75 | 49.63 |
| Bra005614.1-P | Field mustard | nucleus | 48.75 | 49.28 |
| CDY64914 | Canola | nucleus | 48.75 | 49.28 |
| VIT_11s0037g00100.t01 | Wine grape | nucleus | 47.67 | 49.26 |
| KRH52356 | Soybean | nucleus | 48.03 | 49.08 |
| CDY12234 | Canola | nucleus | 48.39 | 48.91 |
| Solyc06g068410.2.1 | Tomato | nucleus | 44.09 | 48.81 |
| AT2G32070.1 | Thale cress | nucleus | 48.03 | 48.73 |
| KRH47360 | Soybean | nucleus | 47.67 | 48.01 |
| KRH44539 | Soybean | cytosol | 46.95 | 46.62 |
| CDY63973 | Canola | nucleus | 45.52 | 46.35 |
| CDY39943 | Canola | cytosol | 45.52 | 46.18 |
| Bra035152.1-P | Field mustard | cytosol | 45.52 | 46.18 |
| CDX87343 | Canola | cytosol | 45.52 | 46.18 |
| CDX97069 | Canola | nucleus | 46.24 | 46.07 |
| CDX69796 | Canola | nucleus | 45.88 | 46.04 |
| CDY53227 | Canola | nucleus | 45.16 | 45.99 |
| Bra008439.1-P | Field mustard | nucleus | 45.16 | 45.99 |
| Bra009001.1-P | Field mustard | nucleus | 45.88 | 45.71 |
| CDX70376 | Canola | nucleus | 45.16 | 45.65 |
| AT5G10960.1 | Thale cress | nucleus | 45.16 | 45.49 |
| Bra006083.1-P | Field mustard | nucleus | 45.16 | 45.32 |
| CDX78405 | Canola | nucleus | 45.16 | 45.32 |
| AT1G80780.3 | Thale cress | cytosol | 44.8 | 43.71 |
| KRH28796 | Soybean | nucleus | 15.05 | 42.86 |
| AT1G15920.2 | Thale cress | nucleus | 43.73 | 42.66 |
| GSMUA_Achr6P19450_001 | Banana | cytosol | 36.56 | 41.8 |
| GSMUA_Achr9P29700_001 | Banana | cytosol | 30.47 | 39.91 |
| GSMUA_Achr6P19460_001 | Banana | cytosol | 24.01 | 38.73 |
| CDY35049 | Canola | nucleus | 37.99 | 38.41 |
| Bra026093.1-P | Field mustard | nucleus | 37.99 | 35.45 |
| GSMUA_AchrUn_... | Banana | mitochondrion | 31.54 | 34.24 |
| GSMUA_Achr8P18010_001 | Banana | mitochondrion | 31.54 | 33.98 |
| GSMUA_Achr4P30930_001 | Banana | cytosol | 20.07 | 28.72 |
| CDY12236 | Canola | cytosol, extracellular | 41.22 | 27.91 |
| CDY33367 | Canola | cytosol, extracellular | 39.07 | 24.01 |
| GSMUA_Achr4P30910_001 | Banana | nucleus | 27.6 | 22.78 |
Protein Annotations
| EnsemblPlants:GSMUA_Achr1P10040_001 | EnsemblPlants:GSMUA_Achr1T10040_001 | EnsemblPlantsGene:GSMUA_Achr1G10040_001 | Gene3D:3.30.420.10 | GO:GO:0003674 | GO:GO:0003676 |
| GO:GO:0005488 | InterPro:IPR036397 | InterPro:RNaseH-like_sf | InterPro:RNaseH_sf | InterPro:RNase_CAF1 | PANTHER:PTHR10797 |
| PANTHER:PTHR10797:SF0 | PFAM:PF04857 | SUPFAM:SSF53098 | UniParc:UPI000296F0C8 | UniProt:M0RYL3 | MapMan:35.1 |
Description
Putative Probable CCR4-associated factor 1 homolog 7 [Source:GMGC_GENE;Acc:GSMUA_Achr1G10040_001]
Coordinates
chr1:-:7634901..7635740
Molecular Weight (calculated)
31367.5 Da
IEP (calculated)
5.027
GRAVY (calculated)
0.018
Length
279 amino acids
Sequence
(BLAST)
(BLAST)
001: MSKEKVENGD VEIRDVWARN LESEIYVIRN IVGDFPFIAM DTEFPGVIIH DTGAFQELAD ANYQYVRANV DRLHLLQLGL TFFNAAGSLP ASPDSGRPIV
101: WQFNFREFDV GRDPSSAHSV KFLEKTGMDF KKNQEEGVDV KLFAELFIPS GTVLDDSVYW VAFQSAFDFA YLLKILTCKP LPETREGFFE ILQKFFPLLY
201: DIKRVIHLND NFHGGLNSLA TLLGIERVGI AHHAGSDSFV TAMVFLKLRG HPVVGSMENY VGLVFGLDAE TAQIFSKKS
101: WQFNFREFDV GRDPSSAHSV KFLEKTGMDF KKNQEEGVDV KLFAELFIPS GTVLDDSVYW VAFQSAFDFA YLLKILTCKP LPETREGFFE ILQKFFPLLY
201: DIKRVIHLND NFHGGLNSLA TLLGIERVGI AHHAGSDSFV TAMVFLKLRG HPVVGSMENY VGLVFGLDAE TAQIFSKKS
001: MSLFLKDDSI QIREVWNDNL QEEMDLIRDV VDDFPYVAMD TEFPGIVVRP VGTFKSNADY HYETLKTNVN ILKMIQLGLT FSNEQGNLPT CGTDKYCIWQ
101: FNFREFDLDS DIFALDSIEL LKQSGIDLAK NTLDGIDSKR FAELLMSSGI VLNENVHWVT FHSGYDFGYL LKLLTCQNLP DSQTDFFKLI NVYFPTVYDI
201: KHLMKFCNSL HGGLNKLAEL LEVERVGICH QAGSDSLLTS CTFRKLKENF FVGPLHKYSG VLYGLGVENG QVAI
101: FNFREFDLDS DIFALDSIEL LKQSGIDLAK NTLDGIDSKR FAELLMSSGI VLNENVHWVT FHSGYDFGYL LKLLTCQNLP DSQTDFFKLI NVYFPTVYDI
201: KHLMKFCNSL HGGLNKLAEL LEVERVGICH QAGSDSLLTS CTFRKLKENF FVGPLHKYSG VLYGLGVENG QVAI
Arabidopsis Description
Polynucleotidyl transferase, ribonuclease H-like superfamily protein [Source:UniProtKB/TrEMBL;Acc:F4HU15]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.