Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- cytosol 3
- nucleus 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra035152.1-P | Field mustard | cytosol | 88.81 | 92.36 |
| CDX87343 | Canola | cytosol | 88.81 | 92.36 |
| CDY39943 | Canola | cytosol | 88.46 | 92.0 |
| CDY63973 | Canola | nucleus | 88.11 | 91.97 |
| CDY53227 | Canola | nucleus | 88.11 | 91.97 |
| Bra008439.1-P | Field mustard | nucleus | 88.11 | 91.97 |
| AT2G32070.1 | Thale cress | nucleus | 82.52 | 85.82 |
| VIT_09s0070g00060.t01 | Wine grape | nucleus | 76.22 | 79.56 |
| GSMUA_Achr3P04600_001 | Banana | nucleus | 66.78 | 77.96 |
| KRH47360 | Soybean | nucleus | 75.17 | 77.62 |
| PGSC0003DMT400036620 | Potato | nucleus | 73.43 | 76.64 |
| Solyc03g117030.1.1 | Tomato | nucleus | 73.43 | 76.64 |
| PGSC0003DMT400073328 | Potato | nucleus | 72.73 | 76.19 |
| KRH44539 | Soybean | cytosol | 74.13 | 75.44 |
| KRH61689 | Soybean | nucleus | 70.98 | 74.36 |
| KRH52356 | Soybean | nucleus | 70.98 | 74.36 |
| PGSC0003DMT400058833 | Potato | cytosol | 70.98 | 74.09 |
| GSMUA_Achr9P13270_001 | Banana | cytosol | 70.98 | 73.82 |
| Solyc06g068410.2.1 | Tomato | nucleus | 64.69 | 73.41 |
| Solyc11g045130.1.1 | Tomato | cytosol | 69.23 | 72.26 |
| VIT_11s0037g00100.t01 | Wine grape | nucleus | 67.83 | 71.85 |
| VIT_04s0008g05850.t01 | Wine grape | nucleus | 68.18 | 71.43 |
| AT5G10960.1 | Thale cress | nucleus | 66.43 | 68.59 |
| Os09t0416800-01 | Rice | cytosol | 65.03 | 66.43 |
| EES05957 | Sorghum | nucleus | 66.78 | 66.32 |
| TraesCS5A01G225900.1 | Wheat | cytosol | 64.34 | 65.95 |
| TraesCS5B01G224400.1 | Wheat | cytosol | 64.34 | 65.95 |
| TraesCS5D01G233200.1 | Wheat | cytosol | 64.34 | 65.95 |
| Zm00001d052031_P001 | Maize | cytosol | 65.73 | 65.51 |
| TraesCS6A01G358700.1 | Wheat | cytosol | 66.08 | 65.4 |
| HORVU6Hr1G085410.1 | Barley | cytosol | 66.08 | 65.4 |
| TraesCS6B01G391400.1 | Wheat | cytosol | 66.08 | 65.4 |
| TraesCS6D01G341500.1 | Wheat | cytosol | 66.08 | 65.4 |
| EER96736 | Sorghum | nucleus | 63.29 | 64.87 |
| Os02t0796300-01 | Rice | cytosol | 66.78 | 64.75 |
| Zm00001d020486_P001 | Maize | extracellular | 62.94 | 64.52 |
| AT1G15920.2 | Thale cress | nucleus | 61.54 | 61.54 |
| GSMUA_Achr4P11450_001 | Banana | cytosol | 56.64 | 60.22 |
| KRH28796 | Soybean | nucleus | 20.63 | 60.2 |
| GSMUA_Achr4P04150_001 | Banana | cytosol | 56.29 | 59.85 |
| GSMUA_Achr4P04220_001 | Banana | nucleus | 56.29 | 59.85 |
| GSMUA_Achr9P22440_001 | Banana | cytosol | 52.1 | 59.13 |
| TraesCS7A01G297000.1 | Wheat | nucleus | 59.79 | 58.16 |
| TraesCS7D01G291400.1 | Wheat | nucleus | 59.79 | 58.16 |
| TraesCS7B01G198900.1 | Wheat | nucleus | 59.44 | 57.82 |
| HORVU7Hr1G067520.3 | Barley | nucleus | 59.44 | 56.67 |
| EES13910 | Sorghum | nucleus | 55.94 | 55.94 |
| Os08t0440300-03 | Rice | cytosol | 55.24 | 54.86 |
| Zm00001d050433_P001 | Maize | nucleus | 52.8 | 53.93 |
| GSMUA_Achr2P05120_001 | Banana | cytosol | 48.25 | 53.7 |
| AT3G44260.1 | Thale cress | cytosol | 47.55 | 48.57 |
| AT5G22250.1 | Thale cress | cytosol | 46.85 | 48.2 |
| Zm00001d018378_P001 | Maize | nucleus | 13.29 | 48.1 |
| GSMUA_Achr1P10040_001 | Banana | nucleus | 43.71 | 44.8 |
| Zm00001d032158_P002 | Maize | plastid | 56.29 | 40.45 |
| AT3G44240.1 | Thale cress | cytosol | 26.22 | 31.38 |
| AT1G61470.1 | Thale cress | nucleus | 29.02 | 29.86 |
| AT1G06450.1 | Thale cress | cytosol | 33.92 | 26.94 |
| AT1G27890.1 | Thale cress | cytosol | 28.32 | 26.82 |
| AT1G27820.1 | Thale cress | cytosol | 28.32 | 26.13 |
Protein Annotations
| Gene3D:3.30.420.10 | MapMan:35.1 | EntrezGene:844417 | ProteinID:AEE36450.1 | ArrayExpress:AT1G80780 | EnsemblPlantsGene:AT1G80780 |
| RefSeq:AT1G80780 | TAIR:AT1G80780 | RefSeq:AT1G80780-TAIR-G | EnsemblPlants:AT1G80780.3 | TAIR:AT1G80780.3 | UniProt:F4HU15 |
| GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003824 | GO:GO:0005488 | GO:GO:0016740 | InterPro:IPR036397 |
| RefSeq:NP_001185452.1 | PFAM:PF04857 | PO:PO:0000013 | PO:PO:0000037 | PO:PO:0000084 | PO:PO:0000230 |
| PO:PO:0000293 | PO:PO:0001016 | PO:PO:0001017 | PO:PO:0001054 | PO:PO:0001078 | PO:PO:0001081 |
| PO:PO:0001185 | PO:PO:0004507 | PO:PO:0007064 | PO:PO:0007095 | PO:PO:0007098 | PO:PO:0007103 |
| PO:PO:0007115 | PO:PO:0007123 | PO:PO:0007611 | PO:PO:0007616 | PO:PO:0008019 | PO:PO:0009005 |
| PO:PO:0009006 | PO:PO:0009009 | PO:PO:0009010 | PO:PO:0009025 | PO:PO:0009029 | PO:PO:0009030 |
| PO:PO:0009031 | PO:PO:0009032 | PO:PO:0009046 | PO:PO:0009047 | PO:PO:0009052 | PO:PO:0020030 |
| PO:PO:0020038 | PO:PO:0020100 | PO:PO:0020137 | PO:PO:0025022 | PO:PO:0025195 | PO:PO:0025281 |
| PANTHER:PTHR10797 | PANTHER:PTHR10797:SF34 | InterPro:RNaseH-like_sf | InterPro:RNaseH_sf | InterPro:RNase_CAF1 | SUPFAM:SSF53098 |
| UniParc:UPI0001E92BB4 | : | : | : | : | : |
Description
Polynucleotidyl transferase, ribonuclease H-like superfamily protein [Source:UniProtKB/TrEMBL;Acc:F4HU15]
Coordinates
chr1:+:30358162..30359606
Molecular Weight (calculated)
32658.1 Da
IEP (calculated)
4.648
GRAVY (calculated)
-0.106
Length
286 amino acids
Sequence
(BLAST)
(BLAST)
001: MSLFLKDDSI QIREVWNDNL QEEMDLIRDV VDDFPYVAMD TEFPGIVVRP VGTFKSNADY HYETLKTNVN ILKMIQLGLT FSNEQGNLPT CGTDKYCIWQ
101: FNFREFDLDS DIFALDSIEL LKQSGIDLAK NTLDGIDSKR FAELLMSSGI VLNENVHWVT FHSGYDFGYL LKLLTCQNLP DSQTDFFKLI NVYFPTVYDI
201: KHLMKFCNSL HGGLNKLAEL LEVERVGICH QAGSDSLLTS CTFRKLKENF FVGPLHKYSG VLYGLGVENE ANGKNVSYRM DMVAWA
101: FNFREFDLDS DIFALDSIEL LKQSGIDLAK NTLDGIDSKR FAELLMSSGI VLNENVHWVT FHSGYDFGYL LKLLTCQNLP DSQTDFFKLI NVYFPTVYDI
201: KHLMKFCNSL HGGLNKLAEL LEVERVGICH QAGSDSLLTS CTFRKLKENF FVGPLHKYSG VLYGLGVENE ANGKNVSYRM DMVAWA
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.