Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- cytosol 5
- nucleus 2
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- plasma membrane 1
- golgi 1
Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
locus | Identity | Homology Identity |
---|
Ortholog
locus | Homology Species | Location | Identity | Homology Identity |
---|---|---|---|---|
GSMUA_Achr9P22440_001 | Banana | cytosol | 63.03 | 64.29 |
GSMUA_Achr4P04220_001 | Banana | nucleus | 66.93 | 63.94 |
GSMUA_Achr4P11450_001 | Banana | cytosol | 66.54 | 63.57 |
GSMUA_Achr4P04150_001 | Banana | cytosol | 66.15 | 63.2 |
GSMUA_Achr1P10040_001 | Banana | nucleus | 60.7 | 55.91 |
Solyc11g045130.1.1 | Tomato | cytosol | 59.14 | 55.47 |
PGSC0003DMT400058833 | Potato | cytosol | 59.14 | 55.47 |
KRH61689 | Soybean | nucleus | 58.75 | 55.31 |
KRH52356 | Soybean | nucleus | 58.75 | 55.31 |
GSMUA_Achr9P13270_001 | Banana | cytosol | 57.98 | 54.18 |
GSMUA_Achr3P04600_001 | Banana | nucleus | 51.36 | 53.88 |
PGSC0003DMT400036620 | Potato | nucleus | 57.2 | 53.65 |
VIT_04s0008g05850.t01 | Wine grape | nucleus | 56.81 | 53.48 |
VIT_11s0037g00100.t01 | Wine grape | nucleus | 56.03 | 53.33 |
Solyc03g117030.1.1 | Tomato | nucleus | 56.81 | 53.28 |
Bra005614.1-P | Field mustard | nucleus | 57.2 | 53.26 |
CDY64914 | Canola | nucleus | 57.2 | 53.26 |
PGSC0003DMT400073328 | Potato | nucleus | 56.03 | 52.75 |
CDY12234 | Canola | nucleus | 56.42 | 52.54 |
KRH47360 | Soybean | nucleus | 56.42 | 52.35 |
GSMUA_Achr9P29700_001 | Banana | cytosol | 43.19 | 52.11 |
KRH28796 | Soybean | nucleus | 19.84 | 52.04 |
VIT_09s0070g00060.t01 | Wine grape | nucleus | 55.25 | 51.82 |
CDX70376 | Canola | nucleus | 55.64 | 51.81 |
Bra006083.1-P | Field mustard | nucleus | 55.64 | 51.44 |
CDX78405 | Canola | nucleus | 55.64 | 51.44 |
AT2G32070.1 | Thale cress | nucleus | 54.86 | 51.27 |
AT5G10960.1 | Thale cress | nucleus | 55.25 | 51.26 |
GSMUA_Achr6P19450_001 | Banana | cytosol | 48.64 | 51.23 |
Solyc06g068410.2.1 | Tomato | nucleus | 49.81 | 50.79 |
CDX69796 | Canola | nucleus | 54.86 | 50.72 |
CDX97069 | Canola | nucleus | 55.25 | 50.71 |
KRH44539 | Soybean | cytosol | 55.25 | 50.53 |
Bra009001.1-P | Field mustard | nucleus | 54.86 | 50.36 |
CDX87343 | Canola | cytosol | 53.31 | 49.82 |
Bra035152.1-P | Field mustard | cytosol | 53.31 | 49.82 |
GSMUA_Achr6P19460_001 | Banana | cytosol | 33.46 | 49.71 |
CDY63973 | Canola | nucleus | 52.92 | 49.63 |
CDY39943 | Canola | cytosol | 52.92 | 49.45 |
CDY53227 | Canola | nucleus | 52.53 | 49.27 |
Bra008439.1-P | Field mustard | nucleus | 52.53 | 49.27 |
AT1G15920.2 | Thale cress | nucleus | 54.09 | 48.6 |
AT1G80780.3 | Thale cress | cytosol | 53.7 | 48.25 |
CDY35049 | Canola | nucleus | 49.42 | 46.01 |
Bra026093.1-P | Field mustard | nucleus | 50.19 | 43.14 |
GSMUA_Achr8P18010_001 | Banana | mitochondrion | 40.08 | 39.77 |
GSMUA_AchrUn_... | Banana | mitochondrion | 39.69 | 39.69 |
CDY12236 | Canola | cytosol, extracellular | 47.47 | 29.61 |
CDY33367 | Canola | cytosol, extracellular | 49.81 | 28.19 |
GSMUA_Achr4P30930_001 | Banana | cytosol | 17.9 | 23.59 |
GSMUA_Achr4P30910_001 | Banana | nucleus | 27.63 | 21.01 |
Protein Annotations
EnsemblPlants:GSMUA_Achr2P05120_001 | EnsemblPlants:GSMUA_Achr2T05120_001 | EnsemblPlantsGene:GSMUA_Achr2G05120_001 | Gene3D:3.30.420.10 | GO:GO:0003674 | GO:GO:0003676 |
GO:GO:0005488 | InterPro:IPR036397 | InterPro:RNaseH-like_sf | InterPro:RNaseH_sf | InterPro:RNase_CAF1 | PANTHER:PTHR10797 |
PANTHER:PTHR10797:SF0 | PFAM:PF04857 | SUPFAM:SSF53098 | UniParc:UPI000295ED38 | UniProt:M0S5A3 | MapMan:35.1 |
Description
Probable CCR4-associated factor 1 homolog 7 [Source:GMGC_GENE;Acc:GSMUA_Achr2G05120_001]
Coordinates
chr2:+:10341727..10343136
Molecular Weight (calculated)
28745.5 Da
IEP (calculated)
5.769
GRAVY (calculated)
0.003
Length
257 amino acids
Sequence
(BLAST)
(BLAST)
001: MCPLILAIMG VWGEEDAVEI RDVWAGNLES EFAVIRDIVD DFPYVAMDTE FPGVVIRHLG DFKQPADANY HSLSANVDLL HLLQLGLTFS DAAGNLPTSP
101: SSGRPVSGID FKKNREDGVD ARRFAELFMS SGVVLNDSIH WVAFHGAYDF GYLIKILTCR KLPETRKEFL DLLHVFFPVV YDIKRVIHLN NNLYGGLNKV
201: AEKLEVERVG TCHQAGSDSL LTARAFMKMR GHRFVGSMEK YVGLLFGLDI ESAHNQN
101: SSGRPVSGID FKKNREDGVD ARRFAELFMS SGVVLNDSIH WVAFHGAYDF GYLIKILTCR KLPETRKEFL DLLHVFFPVV YDIKRVIHLN NNLYGGLNKV
201: AEKLEVERVG TCHQAGSDSL LTARAFMKMR GHRFVGSMEK YVGLLFGLDI ESAHNQN
001: MSLFLKDDSI QIREVWNDNL QEEMDLIRDV VDDFPYVAMD TEFPGIVVRP VGTFKSNADY HYETLKTNVN ILKMIQLGLT FSNEQGNLPT CGTDKYCIWQ
101: FNFREFDLDS DIFALDSIEL LKQSGIDLAK NTLDGIDSKR FAELLMSSGI VLNENVHWVT FHSGYDFGYL LKLLTCQNLP DSQTDFFKLI NVYFPTVYDI
201: KHLMKFCNSL HGGLNKLAEL LEVERVGICH QAGSDSLLTS CTFRKLKENF FVGPLHKYSG VLYGLGVENG QVAI
101: FNFREFDLDS DIFALDSIEL LKQSGIDLAK NTLDGIDSKR FAELLMSSGI VLNENVHWVT FHSGYDFGYL LKLLTCQNLP DSQTDFFKLI NVYFPTVYDI
201: KHLMKFCNSL HGGLNKLAEL LEVERVGICH QAGSDSLLTS CTFRKLKENF FVGPLHKYSG VLYGLGVENG QVAI
Arabidopsis Description
Polynucleotidyl transferase, ribonuclease H-like superfamily protein [Source:UniProtKB/TrEMBL;Acc:F4HU15]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.