Factsheet for Solyc06g068410.2.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

cytosol 3
nucleus 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	cytosol
EpiLoc:	cytosol
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400073328	Potato	nucleus	94.05	86.81
VIT_09s0070g00060.t01	Wine grape	nucleus	84.13	77.37
Solyc03g117030.1.1	Tomato	nucleus	83.33	76.64
Solyc11g045130.1.1	Tomato	cytosol	75.4	69.34
AT2G32070.1	Thale cress	nucleus	75.0	68.73
GSMUA_Achr9P13270_001	Banana	cytosol	73.81	67.64
Bra035152.1-P	Field mustard	cytosol	73.02	66.91
CDX87343	Canola	cytosol	73.02	66.91
Bra008439.1-P	Field mustard	nucleus	72.62	66.79
CDY63973	Canola	nucleus	72.62	66.79
CDY53227	Canola	nucleus	72.62	66.79
Bra005614.1-P	Field mustard	nucleus	73.02	66.67
CDY64914	Canola	nucleus	73.02	66.67
CDY12234	Canola	nucleus	73.02	66.67
CDY39943	Canola	cytosol	72.62	66.55
GSMUA_Achr3P04600_001	Banana	nucleus	64.29	66.12
AT1G80780.3	Thale cress	cytosol	73.41	64.69
CDX70376	Canola	nucleus	67.86	61.96
CDX69796	Canola	nucleus	68.25	61.87
AT5G10960.1	Thale cress	nucleus	67.86	61.73
Bra009001.1-P	Field mustard	nucleus	68.25	61.43
CDX78405	Canola	nucleus	67.46	61.15
Bra006083.1-P	Field mustard	nucleus	67.46	61.15
CDX97069	Canola	nucleus	67.86	61.07
TraesCS5D01G233200.1	Wheat	cytosol	64.29	58.06
TraesCS5B01G224400.1	Wheat	cytosol	64.29	58.06
TraesCS5A01G225900.1	Wheat	cytosol	64.29	58.06
EES05957	Sorghum	nucleus	66.27	57.99
GSMUA_Achr4P04150_001	Banana	cytosol	61.51	57.62
Os09t0416800-01	Rice	cytosol	63.89	57.5
TraesCS6A01G358700.1	Wheat	cytosol	65.87	57.44
TraesCS6B01G391400.1	Wheat	cytosol	65.87	57.44
HORVU6Hr1G085410.1	Barley	cytosol	65.87	57.44
TraesCS6D01G341500.1	Wheat	cytosol	65.87	57.44
EER96736	Sorghum	nucleus	63.49	57.35
GSMUA_Achr4P04220_001	Banana	nucleus	61.11	57.25
Zm00001d052031_P001	Maize	cytosol	65.08	57.14
Os02t0796300-01	Rice	cytosol	66.27	56.61
Zm00001d020486_P001	Maize	extracellular	61.9	55.91
GSMUA_Achr4P11450_001	Banana	cytosol	59.13	55.39
GSMUA_Achr9P22440_001	Banana	cytosol	54.37	54.37
TraesCS7D01G291400.1	Wheat	nucleus	60.71	52.04
TraesCS7A01G297000.1	Wheat	nucleus	60.71	52.04
AT1G15920.2	Thale cress	nucleus	58.73	51.75
TraesCS7B01G198900.1	Wheat	nucleus	60.32	51.7
Solyc06g074030.1.1	Tomato	nucleus	53.97	51.52
HORVU7Hr1G067520.3	Barley	nucleus	60.71	51.0
Zm00001d018378_P001	Maize	nucleus	15.87	50.63
EES13910	Sorghum	nucleus	56.75	50.0
Zm00001d050433_P001	Maize	nucleus	55.56	50.0
GSMUA_Achr2P05120_001	Banana	cytosol	50.79	49.81
Os08t0440300-03	Rice	cytosol	55.95	48.96
Solyc11g068770.1.1	Tomato	nucleus	54.76	48.42
CDY35049	Canola	nucleus	51.98	47.46
GSMUA_Achr1P10040_001	Banana	nucleus	48.81	44.09
Bra026093.1-P	Field mustard	nucleus	51.98	43.81
Solyc01g009360.1.1	Tomato	nucleus	47.22	43.27
Solyc01g009350.2.1	Tomato	nucleus	45.63	41.97
Solyc01g007840.2.1	Tomato	plastid	46.03	40.7
CDY12236	Canola	cytosol, extracellular	60.71	37.14
Zm00001d032158_P002	Maize	plastid	55.56	35.18
CDY33367	Canola	cytosol, extracellular	53.57	29.74

Protein Annotations

Gene3D:3.30.420.10	MapMan:35.1	GO:GO:0000932	GO:GO:0003674	GO:GO:0003676	GO:GO:0003824
GO:GO:0004518	GO:GO:0004535	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0006139	GO:GO:0006412	GO:GO:0008150	GO:GO:0008152	GO:GO:0009056
GO:GO:0009058	GO:GO:0009987	GO:GO:0016787	GO:GO:0017148	GO:GO:0019538	GO:GO:0030015
GO:GO:0043928	GO:GO:0090503	InterPro:IPR036397	UniProt:K4C816	PFAM:PF04857	PANTHER:PTHR10797
PANTHER:PTHR10797:SF34	InterPro:RNaseH-like_sf	InterPro:RNaseH_sf	InterPro:RNase_CAF1	SUPFAM:SSF53098	EnsemblPlantsGene:Solyc06g068410.2
EnsemblPlants:Solyc06g068410.2.1	UniParc:UPI000276639F	:	:	:	:

Description

No Description!

Coordinates

chr6:-:42378291..42379774

Molecular Weight (calculated)

28930.4 Da

IEP (calculated)

4.349

GRAVY (calculated)

-0.177

Length

252 amino acids

Sequence
(BLAST)

001: MSLLPKSDSI HIREVWSDNL EEEFDLIREV VDDYPFIAMD TEFPGVVLRP VGNFKNSNDY HYQTLKDNVD LLKLIQLGLT FSDEDGNLPK CGTDKYCIWQ
101: FNFCDFNPNE DVYANDSIEL LRQSGIDFKK NIENGIDAKR FGEILMSSGI VLNDNVYWVT FHSGYDFGYL LKILTCQDLP ETQEGFFNLI NMYFPVLYDV
201: KHLMKFCNSL HGGLNKLAEL LEVERVGVCH QAGRTGLVQC CCDIQFVGVE NK

Best Arabidopsis Sequence Match ( AT2G32070.1 )
(BLAST)

001: MSLFLKDDSI QIREVWNDNL ESEMALIREV VDDFPFVAMD TEFPGIVCRP VGTFKTNTEY HYETLKTNVN ILKMIQLGLT FSDEKGNLPT CGTDNKYCIW
101: QFNFREFDLE SDIYATDSIE LLRQSGIDFV KNNEFGIDSK RFAELLMSSG IVLNENVHWV TFHSGYDFGY LLKLLTCQNL PETQTGFFEM ISVYFPRVYD
201: IKHLMKFCNS LHGGLNKLAE LLDVERVGIC HQAGSDSLLT SCTFRKLQEN FFIGSMEKYS GVLYGLGVEN GQIVH

Arabidopsis Description

CAF1-7Probable CCR4-associated factor 1 homolog 7 [Source:UniProtKB/Swiss-Prot;Acc:Q9SKZ2]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.