Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- cytosol 3
- nucleus 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400015091 | Potato | nucleus | 95.45 | 94.38 |
| Solyc11g068770.1.1 | Tomato | nucleus | 75.38 | 69.82 |
| Solyc11g045130.1.1 | Tomato | cytosol | 56.44 | 54.38 |
| Solyc06g068410.2.1 | Tomato | nucleus | 51.52 | 53.97 |
| Solyc01g009360.1.1 | Tomato | nucleus | 54.92 | 52.73 |
| Solyc03g117030.1.1 | Tomato | nucleus | 54.55 | 52.55 |
| Solyc01g007840.2.1 | Tomato | plastid | 55.68 | 51.58 |
| Solyc01g009350.2.1 | Tomato | nucleus | 53.03 | 51.09 |
Protein Annotations
| MapMan:16.8.2.1.2.2 | Gene3D:3.30.420.10 | GO:GO:0000932 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003824 |
| GO:GO:0004518 | GO:GO:0004535 | GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0005737 | GO:GO:0006139 | GO:GO:0006412 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009056 |
| GO:GO:0009058 | GO:GO:0009987 | GO:GO:0016787 | GO:GO:0017148 | GO:GO:0019538 | GO:GO:0030015 |
| GO:GO:0043928 | GO:GO:0090503 | InterPro:IPR036397 | UniProt:K4C9C1 | PFAM:PF04857 | PANTHER:PTHR10797 |
| PANTHER:PTHR10797:SF3 | InterPro:RNaseH-like_sf | InterPro:RNaseH_sf | InterPro:RNase_CAF1 | SUPFAM:SSF53098 | EnsemblPlantsGene:Solyc06g074030.1 |
| EnsemblPlants:Solyc06g074030.1.1 | UniParc:UPI000276619C | SEG:seg | : | : | : |
Description
No Description!
Coordinates
chr6:-:45766777..45767571
Molecular Weight (calculated)
30001.8 Da
IEP (calculated)
4.984
GRAVY (calculated)
-0.144
Length
264 amino acids
Sequence
(BLAST)
(BLAST)
001: MAIKIRQVWA HNLEPEFQLI STVIDNYPYI SMDTEFPGVV FKPNVSYNPP SDQYKLLKSN VDVLNLIQLG LTLSDAEGNL PGLGSDGGGY IWQFNFSDFD
101: VERDLYAPDS IELLRRQGID FEMNRECGIN SARFTELMMS SGLVCNESVS WVTFHSAYDF GYLVKILTRR ELPGGLEEFM EVVRVFFGNK VYDMKHLMRF
201: CNSLYGGLDR LAKTLSVDRA VGKCHQAGSD SLLTWHAFQK MRDIYFVNNG AERHAGVLYG LEVN
101: VERDLYAPDS IELLRRQGID FEMNRECGIN SARFTELMMS SGLVCNESVS WVTFHSAYDF GYLVKILTRR ELPGGLEEFM EVVRVFFGNK VYDMKHLMRF
201: CNSLYGGLDR LAKTLSVDRA VGKCHQAGSD SLLTWHAFQK MRDIYFVNNG AERHAGVLYG LEVN
001: MAIIKPNRDL KPDGVTVVTR EVWAENLESE FELISEIIDD YPFISMDTEF PGVIFKSDLR FTNPDDLYTL LKANVDALSL IQVGLTLSDV NGNLPDLGDD
101: LHRGFIWEFN FRDFDVARDA HAPDSIELLR RQGIDFERNC RDGVESERFA ELMMSSGLVC NEEVSWVTFH SAYDFGYLMK ILTRRELPGA LGEFKRVMRV
201: LFGERVYDVK HMMKFCERRL FGGLDRVART LEVNRAVGKC HQAGSDSLLT WHAFQRMRDL YFVQDGPEKH AGVLYGLEVF
101: LHRGFIWEFN FRDFDVARDA HAPDSIELLR RQGIDFERNC RDGVESERFA ELMMSSGLVC NEEVSWVTFH SAYDFGYLMK ILTRRELPGA LGEFKRVMRV
201: LFGERVYDVK HMMKFCERRL FGGLDRVART LEVNRAVGKC HQAGSDSLLT WHAFQRMRDL YFVQDGPEKH AGVLYGLEVF
Arabidopsis Description
CAF1-9Probable CCR4-associated factor 1 homolog 9 [Source:UniProtKB/Swiss-Prot;Acc:Q9LXM2]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.