Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- cytosol 3
- nucleus 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400086131 | Potato | nucleus | 83.64 | 83.94 |
| PGSC0003DMT400096830 | Potato | nucleus | 81.09 | 81.39 |
| Solyc01g009350.2.1 | Tomato | nucleus | 78.18 | 78.47 |
| PGSC0003DMT400094861 | Potato | nucleus | 41.09 | 63.48 |
| Solyc06g074030.1.1 | Tomato | nucleus | 52.73 | 54.92 |
| Solyc11g068770.1.1 | Tomato | nucleus | 53.45 | 51.58 |
| Solyc06g068410.2.1 | Tomato | nucleus | 43.27 | 47.22 |
| Solyc01g007840.2.1 | Tomato | plastid | 48.36 | 46.67 |
| Solyc11g045130.1.1 | Tomato | cytosol | 46.18 | 46.35 |
| Solyc03g117030.1.1 | Tomato | nucleus | 45.45 | 45.62 |
Protein Annotations
| Gene3D:3.30.420.10 | MapMan:35.1 | GO:GO:0000932 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003824 |
| GO:GO:0004518 | GO:GO:0004535 | GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0005737 | GO:GO:0006139 | GO:GO:0006412 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009056 |
| GO:GO:0009058 | GO:GO:0009987 | GO:GO:0016787 | GO:GO:0017148 | GO:GO:0019538 | GO:GO:0030015 |
| GO:GO:0043928 | GO:GO:0090503 | InterPro:IPR036397 | UniProt:K4ATD2 | PFAM:PF04857 | PANTHER:PTHR10797 |
| PANTHER:PTHR10797:SF35 | InterPro:RNaseH-like_sf | InterPro:RNaseH_sf | InterPro:RNase_CAF1 | SUPFAM:SSF53098 | EnsemblPlantsGene:Solyc01g009360.1 |
| EnsemblPlants:Solyc01g009360.1.1 | UniParc:UPI0002763529 | : | : | : | : |
Description
No Description!
Coordinates
chr1:-:3547549..3548376
Molecular Weight (calculated)
31076.1 Da
IEP (calculated)
4.769
GRAVY (calculated)
-0.144
Length
275 amino acids
Sequence
(BLAST)
(BLAST)
001: MAVNGVDPNV YPILIREVWA DNLKEAFEDI SNSIDEFPCI SMDTEYPGNI YNPVVPFSQL SPAEKYSLMK SNVDELKLIQ VGITLSNANG NLPELVTEGE
101: RFRVLWQFNF SDFDQKCDRY AEASIRLLVN SGIDFERNLK FGIRSNDFGE LLMSSGLVCN DLVSWVTFQG ATDIGYLSKI LRGRNLPDSL DEFLEYVKMF
201: FGDTLYDVKR LMSHIHNLHG GLDGVARQLG LVRVAGRQHQ AGSDSLLTCH VFYKMRNNYF VKGVPDPGFL YGLTN
101: RFRVLWQFNF SDFDQKCDRY AEASIRLLVN SGIDFERNLK FGIRSNDFGE LLMSSGLVCN DLVSWVTFQG ATDIGYLSKI LRGRNLPDSL DEFLEYVKMF
201: FGDTLYDVKR LMSHIHNLHG GLDGVARQLG LVRVAGRQHQ AGSDSLLTCH VFYKMRNNYF VKGVPDPGFL YGLTN
001: MSLFLKDDSI QIREVWNDNL QEEMDLIRDV VDDFPYVAMD TEFPGIVVRP VGTFKSNADY HYETLKTNVN ILKMIQLGLT FSNEQGNLPT CGTDKYCIWQ
101: FNFREFDLDS DIFALDSIEL LKQSGIDLAK NTLDGIDSKR FAELLMSSGI VLNENVHWVT FHSGYDFGYL LKLLTCQNLP DSQTDFFKLI NVYFPTVYDI
201: KHLMKFCNSL HGGLNKLAEL LEVERVGICH QAGSDSLLTS CTFRKLKENF FVGPLHKYSG VLYGLGVENG QVAI
101: FNFREFDLDS DIFALDSIEL LKQSGIDLAK NTLDGIDSKR FAELLMSSGI VLNENVHWVT FHSGYDFGYL LKLLTCQNLP DSQTDFFKLI NVYFPTVYDI
201: KHLMKFCNSL HGGLNKLAEL LEVERVGICH QAGSDSLLTS CTFRKLKENF FVGPLHKYSG VLYGLGVENG QVAI
Arabidopsis Description
Polynucleotidyl transferase, ribonuclease H-like superfamily protein [Source:UniProtKB/TrEMBL;Acc:F4HU15]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.