Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- cytosol 3
- nucleus 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400086131 | Potato | nucleus | 93.07 | 93.07 |
| Solyc01g009360.1.1 | Tomato | nucleus | 81.39 | 81.09 |
| PGSC0003DMT400089988 | Potato | nucleus | 76.28 | 76.56 |
| PGSC0003DMT400094861 | Potato | nucleus | 45.26 | 69.66 |
| PGSC0003DMT400015091 | Potato | nucleus | 54.38 | 55.81 |
| PGSC0003DMT400050487 | Potato | nucleus | 53.28 | 51.23 |
| PGSC0003DMT400073328 | Potato | nucleus | 48.91 | 49.08 |
| PGSC0003DMT400058833 | Potato | cytosol | 47.45 | 47.45 |
| PGSC0003DMT400042215 | Potato | plastid | 49.27 | 47.37 |
| PGSC0003DMT400036620 | Potato | nucleus | 46.72 | 46.72 |
Protein Annotations
| EnsemblPlants:PGSC0003DMT400096830 | EnsemblPlantsGene:PGSC0003DMG400046401 | EntrezGene:102596726 | Gene3D:3.30.420.10 | GO:GO:0003674 | GO:GO:0003676 |
| GO:GO:0005488 | InterPro:IPR036397 | InterPro:RNaseH-like_sf | InterPro:RNaseH_sf | InterPro:RNase_CAF1 | PANTHER:PTHR10797 |
| PANTHER:PTHR10797:SF35 | PFAM:PF04857 | PGSC:PGSC0003DMG400046401 | RefSeq:XP_006362645.1 | SUPFAM:SSF53098 | UniParc:UPI000296F48C |
| UniProt:M1DZB9 | MapMan:35.1 | : | : | : | : |
Description
Ccr4-associated factor [Source:PGSC_GENE;Acc:PGSC0003DMG400046401]
Coordinates
chr1:-:6685638..6686462
Molecular Weight (calculated)
30872.0 Da
IEP (calculated)
5.324
GRAVY (calculated)
-0.060
Length
274 amino acids
Sequence
(BLAST)
(BLAST)
001: MAVNGVDPNR YPIMIREVWA DNLNEAFDNI SDLIDEFPCI SMDTEYPGTI YHSPVPFSKQ SPAEKYNLLK SNVDELKLIQ VGITLSDANG NLPELVIQGK
101: WFRVLWQFNY SDFDQNRDRY AEASIQLLVN SGIDFERNLK FGIRSIDFGE LLMSSGLVCN DSVSCVTFQG ANDIGYLLKI LRGQNLSDSL DVFYDFVKVF
201: FGGKLYDVKC LMRPFHNLHC GLDRVAGQLG LVRVAGRQHQ AGSDSLLTCH VFYKMRNGYF IKGVLDAGVL HGLT
101: WFRVLWQFNY SDFDQNRDRY AEASIQLLVN SGIDFERNLK FGIRSIDFGE LLMSSGLVCN DSVSCVTFQG ANDIGYLLKI LRGQNLSDSL DVFYDFVKVF
201: FGGKLYDVKC LMRPFHNLHC GLDRVAGQLG LVRVAGRQHQ AGSDSLLTCH VFYKMRNGYF IKGVLDAGVL HGLT
001: MSLFLKDDSI QIREVWNDNL QEEMDLIRDV VDDFPYVAMD TEFPGIVVRP VGTFKSNADY HYETLKTNVN ILKMIQLGLT FSNEQGNLPT CGTDKYCIWQ
101: FNFREFDLDS DIFALDSIEL LKQSGIDLAK NTLDGIDSKR FAELLMSSGI VLNENVHWVT FHSGYDFGYL LKLLTCQNLP DSQTDFFKLI NVYFPTVYDI
201: KHLMKFCNSL HGGLNKLAEL LEVERVGICH QAGSDSLLTS CTFRKLKENF FVGPLHKYSG VLYGLGVENG QVAI
101: FNFREFDLDS DIFALDSIEL LKQSGIDLAK NTLDGIDSKR FAELLMSSGI VLNENVHWVT FHSGYDFGYL LKLLTCQNLP DSQTDFFKLI NVYFPTVYDI
201: KHLMKFCNSL HGGLNKLAEL LEVERVGICH QAGSDSLLTS CTFRKLKENF FVGPLHKYSG VLYGLGVENG QVAI
Arabidopsis Description
Polynucleotidyl transferase, ribonuclease H-like superfamily protein [Source:UniProtKB/TrEMBL;Acc:F4HU15]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.