Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- cytosol 2
- mitochondrion 2
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400086131 | Potato | nucleus | 73.03 | 47.45 |
| PGSC0003DMT400096830 | Potato | nucleus | 69.66 | 45.26 |
| Solyc01g009360.1.1 | Tomato | nucleus | 63.48 | 41.09 |
| PGSC0003DMT400089988 | Potato | nucleus | 61.8 | 40.29 |
| PGSC0003DMT400015091 | Potato | nucleus | 44.38 | 29.59 |
| PGSC0003DMT400073328 | Potato | nucleus | 41.01 | 26.74 |
| PGSC0003DMT400058833 | Potato | cytosol | 40.45 | 26.28 |
| PGSC0003DMT400050487 | Potato | nucleus | 41.01 | 25.61 |
| PGSC0003DMT400036620 | Potato | nucleus | 39.33 | 25.55 |
| PGSC0003DMT400042215 | Potato | plastid | 39.33 | 24.56 |
Protein Annotations
| EnsemblPlants:PGSC0003DMT400094861 | EnsemblPlantsGene:PGSC0003DMG400044432 | Gene3D:3.30.420.10 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0005488 |
| InterPro:IPR036397 | InterPro:RNaseH-like_sf | InterPro:RNaseH_sf | PANTHER:PTHR10797 | PANTHER:PTHR10797:SF35 | PGSC:PGSC0003DMG400044432 |
| SUPFAM:SSF53098 | UniParc:UPI0002962F8B | UniProt:M1DV14 | MapMan:35.1 | : | : |
Description
Ccr4-associated factor [Source:PGSC_GENE;Acc:PGSC0003DMG400044432]
Coordinates
chr1:-:6669849..6671527
Molecular Weight (calculated)
20071.1 Da
IEP (calculated)
8.617
GRAVY (calculated)
-0.133
Length
178 amino acids
Sequence
(BLAST)
(BLAST)
001: MEGREAFFPA PSTVCQSKLS AKSYAHFTRH YIFYVICHTK YMPAARQEAS IQLLVNSGID FERNLELGIR SINFDELLMS SGLVCNDSVS WVTFQGANDI
101: GYLLKILRGR NLPDSLDVFY DFVKMFFGGK LYDVKCLMRH FHNLHGGLDR VAGQLGLVRV AGRQHQAGDS NSQPSGWK
101: GYLLKILRGR NLPDSLDVFY DFVKMFFGGK LYDVKCLMRH FHNLHGGLDR VAGQLGLVRV AGRQHQAGDS NSQPSGWK
001: MIKSEADLSD VIVIRDVWAY NLESEFDLIR GIVEDYPFIS MDTEFPGVIY KADLDVLRRG NPNYLYNLLK SNVDALSLIQ VGLTLSDADG NLPDLGGQKN
101: RRYIWEFNFR DFDVERDPHA PDSIELLRRH GIDFERNRRE GVESERFAEL MMSSGLICNE SVSWVTFHSA YDFGYLVKIL TRRQLPVALR EFLGLLRAFF
201: GDRVYDVKHI MRFCEQRLYG GLDRVARSLE VNRAVGKCHQ AGSDSLLTWQ AFQRMRDLYF VEDGAEKHAG VLYGLEVF
101: RRYIWEFNFR DFDVERDPHA PDSIELLRRH GIDFERNRRE GVESERFAEL MMSSGLICNE SVSWVTFHSA YDFGYLVKIL TRRQLPVALR EFLGLLRAFF
201: GDRVYDVKHI MRFCEQRLYG GLDRVARSLE VNRAVGKCHQ AGSDSLLTWQ AFQRMRDLYF VEDGAEKHAG VLYGLEVF
Arabidopsis Description
CAF1-11Probable CCR4-associated factor 1 homolog 11 [Source:UniProtKB/Swiss-Prot;Acc:Q9FMS6]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.