Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- cytosol 3
- nucleus 3
- plastid 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc11g068770.1.1 | Tomato | nucleus | 94.74 | 94.74 |
| PGSC0003DMT400015091 | Potato | nucleus | 72.98 | 77.9 |
| PGSC0003DMT400042215 | Potato | plastid | 56.14 | 56.14 |
| PGSC0003DMT400058833 | Potato | cytosol | 52.63 | 54.74 |
| PGSC0003DMT400073328 | Potato | nucleus | 52.28 | 54.58 |
| PGSC0003DMT400086131 | Potato | nucleus | 52.28 | 54.38 |
| PGSC0003DMT400096830 | Potato | nucleus | 51.23 | 53.28 |
| PGSC0003DMT400036620 | Potato | nucleus | 49.82 | 51.82 |
| PGSC0003DMT400089988 | Potato | nucleus | 47.37 | 49.45 |
| PGSC0003DMT400094861 | Potato | nucleus | 25.61 | 41.01 |
Protein Annotations
| EnsemblPlants:PGSC0003DMT400050487 | EnsemblPlantsGene:PGSC0003DMG400019618 | EntrezGene:102594631 | Gene3D:3.30.420.10 | GO:GO:0003674 | GO:GO:0003676 |
| GO:GO:0005488 | InterPro:IPR036397 | InterPro:RNaseH-like_sf | InterPro:RNaseH_sf | InterPro:RNase_CAF1 | PANTHER:PTHR10797 |
| PANTHER:PTHR10797:SF3 | PFAM:PF04857 | PGSC:PGSC0003DMG400019618 | RefSeq:XP_006362860.1 | SUPFAM:SSF53098 | UniParc:UPI000296B414 |
| UniProt:M1BQD1 | MapMan:16.8.2.1.2.2 | : | : | : | : |
Description
CCR4-associated factor [Source:PGSC_GENE;Acc:PGSC0003DMG400019618]
Coordinates
chr11:+:40676832..40678129
Molecular Weight (calculated)
32862.3 Da
IEP (calculated)
4.977
GRAVY (calculated)
-0.181
Length
285 amino acids
Sequence
(BLAST)
(BLAST)
001: MAVEIVDSDE NPIKIREVWS DNLESEFELI RTAIDQYPFI SMDTEFPGVI YKPEVISSRQ NRRRYVPLLP SEHYKMLKSN VDVLNIIQVG LTLSDSDGNL
101: PDLGTAGVNR YIWQFNFSDF DVARDRHAPD SIELLRRHGI DFEKNKVIGI DSCRFAELMM SSGLVCNETV SWVTFHSAYD FAYLVKILTR RELPGELEDF
201: LEVFKVFFGN NVYDVKHLMR FCEKLYGGLD RIAKVLEVNR AVGKCHQAGS DSLLTWHAFQ KMRDVYFVND GPEKYAGVLF GLEVY
101: PDLGTAGVNR YIWQFNFSDF DVARDRHAPD SIELLRRHGI DFEKNKVIGI DSCRFAELMM SSGLVCNETV SWVTFHSAYD FAYLVKILTR RELPGELEDF
201: LEVFKVFFGN NVYDVKHLMR FCEKLYGGLD RIAKVLEVNR AVGKCHQAGS DSLLTWHAFQ KMRDVYFVND GPEKYAGVLF GLEVY
001: MIKSEADLSD VIVIRDVWAY NLESEFDLIR GIVEDYPFIS MDTEFPGVIY KADLDVLRRG NPNYLYNLLK SNVDALSLIQ VGLTLSDADG NLPDLGGQKN
101: RRYIWEFNFR DFDVERDPHA PDSIELLRRH GIDFERNRRE GVESERFAEL MMSSGLICNE SVSWVTFHSA YDFGYLVKIL TRRQLPVALR EFLGLLRAFF
201: GDRVYDVKHI MRFCEQRLYG GLDRVARSLE VNRAVGKCHQ AGSDSLLTWQ AFQRMRDLYF VEDGAEKHAG VLYGLEVF
101: RRYIWEFNFR DFDVERDPHA PDSIELLRRH GIDFERNRRE GVESERFAEL MMSSGLICNE SVSWVTFHSA YDFGYLVKIL TRRQLPVALR EFLGLLRAFF
201: GDRVYDVKHI MRFCEQRLYG GLDRVARSLE VNRAVGKCHQ AGSDSLLTWQ AFQRMRDLYF VEDGAEKHAG VLYGLEVF
Arabidopsis Description
CAF1-11Probable CCR4-associated factor 1 homolog 11 [Source:UniProtKB/Swiss-Prot;Acc:Q9FMS6]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.