Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- cytosol 3
- nucleus 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc01g009350.2.1 | Tomato | nucleus | 81.69 | 81.39 |
| PGSC0003DMT400086131 | Potato | nucleus | 80.95 | 80.66 |
| PGSC0003DMT400096830 | Potato | nucleus | 76.56 | 76.28 |
| PGSC0003DMT400094861 | Potato | nucleus | 40.29 | 61.8 |
| PGSC0003DMT400015091 | Potato | nucleus | 50.92 | 52.06 |
| PGSC0003DMT400050487 | Potato | nucleus | 49.45 | 47.37 |
| PGSC0003DMT400073328 | Potato | nucleus | 46.15 | 46.15 |
| PGSC0003DMT400058833 | Potato | cytosol | 45.79 | 45.62 |
| PGSC0003DMT400042215 | Potato | plastid | 47.25 | 45.26 |
| PGSC0003DMT400036620 | Potato | nucleus | 43.96 | 43.8 |
Protein Annotations
| EnsemblPlants:PGSC0003DMT400089988 | EnsemblPlantsGene:PGSC0003DMG400039559 | Gene3D:3.30.420.10 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0005488 |
| InterPro:IPR036397 | InterPro:RNaseH-like_sf | InterPro:RNaseH_sf | InterPro:RNase_CAF1 | PANTHER:PTHR10797 | PANTHER:PTHR10797:SF35 |
| PFAM:PF04857 | PGSC:PGSC0003DMG400039559 | SUPFAM:SSF53098 | UniParc:UPI000295D454 | UniProt:M1DJC7 | MapMan:35.1 |
Description
Ccr4-associated factor [Source:PGSC_GENE;Acc:PGSC0003DMG400039559]
Coordinates
chr1:-:6666074..6666895
Molecular Weight (calculated)
31030.0 Da
IEP (calculated)
4.707
GRAVY (calculated)
-0.162
Length
273 amino acids
Sequence
(BLAST)
(BLAST)
001: MDVNGVDPNR YPILIREVWA NNLKKAFKEI SDSIDKFPCI SMDTEYPGRI YNSPVPFSQQ SPAEKYNVLK LNVDALKLIQ VGITLSDANG NLPELDIEKQ
101: RRRVVWQFNF SDFNRMYDPY VEASIQLLVD SGIDLQRNLD FGIRSIDFGE LLMSSGLVCS DSVSWVTFQG EFDIAFLLKI LRGRNLPDSL DEFFEFVKMF
201: FGDKLYDVKR LTIHIPNLHG GLDWVAENLG LAREAGRQHQ AGSYSLLTCH VFYSMRDGFE DGVPDAGVLH GLT
101: RRRVVWQFNF SDFNRMYDPY VEASIQLLVD SGIDLQRNLD FGIRSIDFGE LLMSSGLVCS DSVSWVTFQG EFDIAFLLKI LRGRNLPDSL DEFFEFVKMF
201: FGDKLYDVKR LTIHIPNLHG GLDWVAENLG LAREAGRQHQ AGSYSLLTCH VFYSMRDGFE DGVPDAGVLH GLT
001: MSQAPNPEEE DDTIEIREVW NHNLEQEMAL IEQSIDDFPY VAMDTEFPGI VCKTVTANPN PNPYSIHYEY NYDTLKANVN MLKLIQLGLT LSDEKGNLPT
101: CGTNKQCIWQ FNFREFNVIS DMFALDSIEL LRKSAIDLEK NNECGVDAKR FAELLMGSGV VLNDKIHWVT FHCGYDFGYL LKLLSGKELP EEISDFFDQM
201: EKFFPVVYDI KYLMGFCTNL YGGLEKIAEL LGVKRVGISH QAGSDSLLTL RTFIKMKEFF FTGSLLKYSG FLFGLDNPRL LTGSKN
101: CGTNKQCIWQ FNFREFNVIS DMFALDSIEL LRKSAIDLEK NNECGVDAKR FAELLMGSGV VLNDKIHWVT FHCGYDFGYL LKLLSGKELP EEISDFFDQM
201: EKFFPVVYDI KYLMGFCTNL YGGLEKIAEL LGVKRVGISH QAGSDSLLTL RTFIKMKEFF FTGSLLKYSG FLFGLDNPRL LTGSKN
Arabidopsis Description
CAF1-2Probable CCR4-associated factor 1 homolog 2 [Source:UniProtKB/Swiss-Prot;Acc:Q9S9P2]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.