Factsheet for Solyc01g007840.2.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

cytosol 2
plastid 7
nucleus 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	cytosol, nucleus, plastid
BaCelLo:	cytosol
ChloroP:	plastid
EpiLoc:	cytosol
iPSORT:	plastid
MultiLoc:	nucleus
Plant-mPloc:	nucleus
Predotar:	plastid
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	plastid

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc06g073150.2.1
Solyc11g017300.1.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G44260.1	Solyc06g073150.2.1	AT1G22920.1	21798944
AT3G44260.1	Solyc11g017300.1.1	AT1G22920.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400042215	Potato	plastid	91.23	91.23
Bra020179.1-P	Field mustard	nucleus	58.95	62.22
CDY35673	Canola	nucleus	58.25	61.48
CDY09125	Canola	nucleus	58.25	61.48
CDX70991	Canola	cytosol, nucleus, plastid	27.37	61.42
Bra035002.1-P	Field mustard	nucleus	57.89	60.89
VIT_06s0080g01090.t01	Wine grape	nucleus	58.95	60.43
CDY47299	Canola	nucleus	57.54	60.29
KRH25294	Soybean	nucleus	58.6	60.07
AT3G44260.1	Thale cress	cytosol	58.95	60.0
CDY08688	Canola	cytosol	58.25	59.5
AT5G22250.1	Thale cress	cytosol	57.89	59.35
CDX98586	Canola	nucleus	57.54	57.95
CDX92371	Canola	nucleus	57.19	57.6
CDX88806	Canola	cytosol	57.54	57.54
Bra002400.1-P	Field mustard	nucleus	56.49	57.3
Bra006616.1-P	Field mustard	cytosol	57.19	57.19
KRH30376	Soybean	nucleus	56.14	56.34
GSMUA_Achr9P29700_001	Banana	cytosol	41.75	55.87
Solyc06g074030.1.1	Tomato	nucleus	51.58	55.68
Solyc11g068770.1.1	Tomato	nucleus	55.09	55.09
GSMUA_Achr6P19450_001	Banana	cytosol	46.32	54.1
GSMUA_Achr6P19460_001	Banana	cytosol	30.88	50.87
KRH26669	Soybean	endoplasmic reticulum, golgi	54.74	50.49
KRH22647	Soybean	endoplasmic reticulum, vacuole	55.09	50.32
Solyc01g009360.1.1	Tomato	nucleus	46.67	48.36
Solyc03g117030.1.1	Tomato	nucleus	45.96	47.81
Solyc11g045130.1.1	Tomato	cytosol	44.56	46.35
Solyc06g068410.2.1	Tomato	nucleus	40.7	46.03
Solyc01g009350.2.1	Tomato	nucleus	44.21	45.99
GSMUA_AchrUn_...	Banana	mitochondrion	38.25	42.41
GSMUA_Achr8P18010_001	Banana	mitochondrion	38.25	42.08
Zm00001d026657_P001	Maize	cytosol	43.86	41.81
Zm00001d001774_P001	Maize	nucleus	42.81	41.08
Os04t0684900-02	Rice	nucleus	46.67	40.43
TraesCS2A01G583000.1	Wheat	nucleus	44.21	38.89
TraesCS2B01G603600.1	Wheat	cytosol	44.21	38.77
Zm00001d007664_P001	Maize	extracellular, nucleus, plastid	17.54	38.46
Zm00001d007662_P001	Maize	extracellular, nucleus, plastid	17.54	38.46
Zm00001d007669_P001	Maize	extracellular, nucleus, plastid	17.54	38.46
TraesCS2D01G597200.1	Wheat	nucleus	43.86	38.23
HORVU2Hr1G123480.1	Barley	nucleus	43.51	38.15
Zm00001d007666_P001	Maize	extracellular, nucleus, plastid	17.89	37.23
TraesCS7D01G075800.1	Wheat	nucleus	33.68	37.21
TraesCSU01G062600.1	Wheat	cytosol	33.33	36.97
EES11684	Sorghum	nucleus	42.11	35.82
TraesCS3D01G384800.1	Wheat	cytosol, mitochondrion, nucleus, plasma membrane	19.65	32.18
TraesCS6D01G318000.1	Wheat	plastid	31.93	32.16
EER87806	Sorghum	cytosol, nucleus, plasma membrane	35.44	31.96
TraesCS3B01G424000.1	Wheat	cytosol	22.46	31.07
Os10t0128300-00	Rice	plastid	31.58	30.93
TraesCS7A01G347500.1	Wheat	cytosol	28.42	30.57
Os10t0123900-00	Rice	extracellular, mitochondrion, nucleus	29.47	30.55
TraesCS3D01G406100.1	Wheat	nucleus, plasma membrane, plastid	30.18	30.39
Zm00001d002885_P001	Maize	plastid	33.68	30.09
TraesCS7D01G331400.1	Wheat	cytosol	27.72	30.04
TraesCS7B01G235700.1	Wheat	cytosol	27.72	30.04
TraesCS7A01G347600.1	Wheat	cytosol	27.72	29.92
EES10179	Sorghum	plasma membrane, plastid	29.47	29.89
KXG20050	Sorghum	plastid	28.07	29.74
Zm00001d007654_P001	Maize	nucleus, plasma membrane, plastid	29.12	28.82
Os10t0124200-00	Rice	cytosol	29.82	28.81
Zm00001d048757_P001	Maize	nucleus, plasma membrane, plastid	29.47	28.77
TraesCS3A01G411800.1	Wheat	mitochondrion, plastid	30.18	28.67
Zm00001d048752_P001	Maize	nucleus, plasma membrane, plastid	29.47	28.57
Zm00001d048754_P001	Maize	nucleus, plasma membrane, plastid	29.47	28.57
Zm00001d048748_P001	Maize	nucleus, plasma membrane, plastid	29.12	28.33
Zm00001d048746_P001	Maize	nucleus, plasma membrane, plastid	28.77	28.08
TraesCS4B01G071200.1	Wheat	plastid	29.47	27.91
TraesCS4A01G243800.1	Wheat	plastid	29.12	27.85
TraesCS4A01G243900.1	Wheat	plastid	29.12	27.57
TraesCS4A01G243700.1	Wheat	plastid	28.77	27.52
TraesCS4D01G069900.1	Wheat	plastid	29.12	27.48
TraesCS4B01G071000.1	Wheat	plastid	28.42	27.46
Os06t0138400-00	Rice	nucleus, peroxisome, plastid	35.79	27.2
TraesCS4B01G071100.1	Wheat	plastid	28.77	27.15
OQU76452	Sorghum	plastid	15.44	26.99
TraesCS3B01G444600.1	Wheat	mitochondrion	28.07	26.76
Os06t0503900-01	Rice	cytosol, nucleus, plasma membrane	26.32	26.69
EES09326	Sorghum	mitochondrion, nucleus	27.72	26.51
OQU83918	Sorghum	cytosol, extracellular, nucleus	16.84	25.53
TraesCS3B01G445400.1	Wheat	plastid	28.77	24.77
OQU83919	Sorghum	mitochondrion	21.05	24.59
TraesCS7A01G082100.1	Wheat	nucleus	36.84	24.03
KXG22837	Sorghum	mitochondrion	28.77	23.7
Os07t0169800-00	Rice	nucleus	40.7	23.2
Zm00001d029981_P001	Maize	plastid	30.18	23.18
KXG38897	Sorghum	plastid	27.72	23.17
OQU76454	Sorghum	plastid	16.49	23.15
Zm00001d031508_P001	Maize	cytosol	31.93	23.1
Zm00001d007893_P001	Maize	nucleus	35.79	20.44
EER98038	Sorghum	plastid	37.89	18.75
OQU76453	Sorghum	plastid	16.84	15.95

Protein Annotations

MapMan:16.8.2.1.2.2	Gene3D:3.30.420.10	GO:GO:0000932	GO:GO:0003674	GO:GO:0003676	GO:GO:0003824
GO:GO:0004518	GO:GO:0004535	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0006139	GO:GO:0006412	GO:GO:0008150	GO:GO:0008152	GO:GO:0009056
GO:GO:0009058	GO:GO:0009987	GO:GO:0016787	GO:GO:0017148	GO:GO:0019538	GO:GO:0030015
GO:GO:0043928	GO:GO:0090503	InterPro:IPR036397	UniProt:K4ASY2	PFAM:PF04857	PANTHER:PTHR10797
PANTHER:PTHR10797:SF35	InterPro:RNaseH-like_sf	InterPro:RNaseH_sf	InterPro:RNase_CAF1	SUPFAM:SSF53098	EnsemblPlantsGene:Solyc01g007840.2
EnsemblPlants:Solyc01g007840.2.1	UniParc:UPI0002762B12	SEG:seg	:	:	:

Description

No Description!

Coordinates

chr1:-:2006792..2007838

Molecular Weight (calculated)

32170.9 Da

IEP (calculated)

6.720

GRAVY (calculated)

0.021

Length

285 amino acids

Sequence
(BLAST)

001: MAFSGIVTPP PPPFAAGKKP VFVRSVWANN LESEFSLIRG LVDRFPFVSM DTEFPGLIYR SDIRAKNPIE LYNNLKSNVD ALKLIQVGIT LTDVYGNLPD
101: FGCGYGFIWE FNFRDFDVLH DDHAPESIEL LRDHGMNFKK TRARGADTTR FAELMMSSGL LCNEAVSYVT FHSAYDFGYL IKVITGCNLP GGLTEFLKLM
201: KVFFGKRVYD VKYMMMFFPY LHGGLDRVAE TLMLNRVVGN SHQAGSDSLL TWHVFQKVKQ VYLADNEAHT EKFGGILFGL EVLSP

Best Arabidopsis Sequence Match ( AT3G44260.1 )
(BLAST)

001: MAIIKPNRDL KPDGVTVVTR EVWAENLESE FELISEIIDD YPFISMDTEF PGVIFKSDLR FTNPDDLYTL LKANVDALSL IQVGLTLSDV NGNLPDLGDD
101: LHRGFIWEFN FRDFDVARDA HAPDSIELLR RQGIDFERNC RDGVESERFA ELMMSSGLVC NEEVSWVTFH SAYDFGYLMK ILTRRELPGA LGEFKRVMRV
201: LFGERVYDVK HMMKFCERRL FGGLDRVART LEVNRAVGKC HQAGSDSLLT WHAFQRMRDL YFVQDGPEKH AGVLYGLEVF

Arabidopsis Description

CAF1-9Probable CCR4-associated factor 1 homolog 9 [Source:UniProtKB/Swiss-Prot;Acc:Q9LXM2]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.