Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- plastid 2
- nucleus 3
- mitochondrion 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Os04t0654700-02 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT3G44260.1 | Os04t0654700-02 | AT1G22920.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra020179.1-P | Field mustard | nucleus | 24.8 | 45.93 |
| CDY09125 | Canola | nucleus | 24.2 | 44.81 |
| CDY35673 | Canola | nucleus | 24.0 | 44.44 |
| GSMUA_Achr8P18010_001 | Banana | mitochondrion | 22.8 | 44.02 |
| CDY47299 | Canola | nucleus | 23.8 | 43.75 |
| VIT_06s0080g01090.t01 | Wine grape | nucleus | 24.2 | 43.53 |
| Bra035002.1-P | Field mustard | nucleus | 23.4 | 43.17 |
| AT5G22250.1 | Thale cress | cytosol | 23.8 | 42.81 |
| GSMUA_AchrUn_... | Banana | mitochondrion | 22.0 | 42.8 |
| AT3G44260.1 | Thale cress | cytosol | 23.8 | 42.5 |
| CDX98586 | Canola | nucleus | 23.8 | 42.05 |
| KRH25294 | Soybean | nucleus | 23.2 | 41.73 |
| Bra002400.1-P | Field mustard | nucleus | 23.4 | 41.64 |
| CDY08688 | Canola | cytosol | 23.2 | 41.58 |
| CDX92371 | Canola | nucleus | 23.4 | 41.34 |
| PGSC0003DMT400042215 | Potato | plastid | 23.4 | 41.05 |
| KRH30376 | Soybean | nucleus | 23.2 | 40.85 |
| Solyc01g007840.2.1 | Tomato | plastid | 23.2 | 40.7 |
| CDX88806 | Canola | cytosol | 23.0 | 40.35 |
| CDX70991 | Canola | cytosol, nucleus, plastid | 10.2 | 40.16 |
| Bra006616.1-P | Field mustard | cytosol | 22.8 | 40.0 |
| Os04t0684900-02 | Rice | nucleus | 26.0 | 39.51 |
| Zm00001d031508_P001 | Maize | cytosol | 31.0 | 39.34 |
| Os02t0796300-01 | Rice | cytosol | 23.2 | 39.32 |
| Os09t0416800-01 | Rice | cytosol | 22.0 | 39.29 |
| KRH26669 | Soybean | endoplasmic reticulum, golgi | 24.0 | 38.84 |
| Os08t0440300-03 | Rice | cytosol | 21.8 | 37.85 |
| Zm00001d007893_P001 | Maize | nucleus | 36.6 | 36.67 |
| Os06t0138400-00 | Rice | nucleus, peroxisome, plastid | 27.4 | 36.53 |
| KRH22647 | Soybean | endoplasmic reticulum, vacuole | 22.6 | 36.22 |
| Os10t0128300-00 | Rice | plastid | 20.4 | 35.05 |
| Os10t0123900-00 | Rice | extracellular, mitochondrion, nucleus | 19.0 | 34.55 |
| EER98038 | Sorghum | plastid | 37.2 | 32.29 |
| Os10t0124200-00 | Rice | cytosol | 19.0 | 32.2 |
| Os06t0503900-01 | Rice | cytosol, nucleus, plasma membrane | 16.2 | 28.83 |
Protein Annotations
| Gene3D:3.30.420.10 | MapMan:35.1 | UniProt:A0A0P0X2X3 | ProteinID:BAT00233.1 | GO:GO:0000932 | GO:GO:0003674 |
| GO:GO:0003676 | GO:GO:0003824 | GO:GO:0004518 | GO:GO:0004535 | GO:GO:0005488 | GO:GO:0005575 |
| GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 | GO:GO:0006139 | GO:GO:0006412 | GO:GO:0008150 |
| GO:GO:0008152 | GO:GO:0009056 | GO:GO:0009058 | GO:GO:0009987 | GO:GO:0016787 | GO:GO:0017148 |
| GO:GO:0019538 | GO:GO:0030015 | GO:GO:0043928 | GO:GO:0090503 | InterPro:IPR036397 | EnsemblPlantsGene:Os07g0169800 |
| EnsemblPlants:Os07t0169800-00 | PFAM:PF04857 | PANTHER:PTHR10797 | PANTHER:PTHR10797:SF13 | InterPro:RNaseH-like_sf | InterPro:RNaseH_sf |
| InterPro:RNase_CAF1 | SUPFAM:SSF53098 | UniParc:UPI000393BDA4 | SEG:seg | : | : |
Description
CCR4-associated factor 1-10, carbon catabolite repressor 4-associated factor 1-10, CCR4-associated factor 1C, carbon catabolite repressor 4-associated factor 1CRibonuclease CAF1 domain containing protein. (Os07t0169800-00)
Coordinates
chr7:-:3706807..3711327
Molecular Weight (calculated)
54381.4 Da
IEP (calculated)
11.474
GRAVY (calculated)
-0.479
Length
500 amino acids
Sequence
(BLAST)
(BLAST)
001: MKETEKKSLA HGRSRRRPTP EPSSSHPRTP PATFLAAATL PRPPSGRIWE GRGGPPPPPH RNRCRRRPAP RRPHSSLPLP LPPGAVVVAV HAAATTVRCR
101: RRRRRPPPAS LRPDLGGEPP PLPPGAVIVA APRPADHMPR RRRPPPASLR LDLGGEGSRC RYRSEPSSSP STPPPPPPRV VVAATAALPQ PPSDQIWEGR
201: GGDGPARLTT AAAAAAARSP EIVKVRSVWA HNLDEEANLI ESLFPSFRLA AVDTEFPGTV HRPSAPAYTL TRKQKYALLK KNVDELHLVQ LGLTLFDAGG
301: RLPDLGTGGA ARYVWEFNFR EFDLRRHAHA PESIALLRSK GVDFDRTRRG GVDAAAFGPR LRRWLRAGLG RAGLVTFSGA YDLAYMLKML YGGGGGGYRL
401: PGDAATFEFV VRAVIGRTLY DVGKMARHCP GDMRGGLERV AGKLGVRRAV GEAHQAGSDS LLTSQMFMRM RERYFDDQDA LTAVAGINFG YLNFTSCEYT
101: RRRRRPPPAS LRPDLGGEPP PLPPGAVIVA APRPADHMPR RRRPPPASLR LDLGGEGSRC RYRSEPSSSP STPPPPPPRV VVAATAALPQ PPSDQIWEGR
201: GGDGPARLTT AAAAAAARSP EIVKVRSVWA HNLDEEANLI ESLFPSFRLA AVDTEFPGTV HRPSAPAYTL TRKQKYALLK KNVDELHLVQ LGLTLFDAGG
301: RLPDLGTGGA ARYVWEFNFR EFDLRRHAHA PESIALLRSK GVDFDRTRRG GVDAAAFGPR LRRWLRAGLG RAGLVTFSGA YDLAYMLKML YGGGGGGYRL
401: PGDAATFEFV VRAVIGRTLY DVGKMARHCP GDMRGGLERV AGKLGVRRAV GEAHQAGSDS LLTSQMFMRM RERYFDDQDA LTAVAGINFG YLNFTSCEYT
001: MSQAPNPEEE DDTIEIREVW NHNLEQEMAL IEQSIDDFPY VAMDTEFPGI VCKTVTANPN PNPYSIHYEY NYDTLKANVN MLKLIQLGLT LSDEKGNLPT
101: CGTNKQCIWQ FNFREFNVIS DMFALDSIEL LRKSAIDLEK NNECGVDAKR FAELLMGSGV VLNDKIHWVT FHCGYDFGYL LKLLSGKELP EEISDFFDQM
201: EKFFPVVYDI KYLMGFCTNL YGGLEKIAEL LGVKRVGISH QAGSDSLLTL RTFIKMKEFF FTGSLLKYSG FLFGLDNPRL LTGSKN
101: CGTNKQCIWQ FNFREFNVIS DMFALDSIEL LRKSAIDLEK NNECGVDAKR FAELLMGSGV VLNDKIHWVT FHCGYDFGYL LKLLSGKELP EEISDFFDQM
201: EKFFPVVYDI KYLMGFCTNL YGGLEKIAEL LGVKRVGISH QAGSDSLLTL RTFIKMKEFF FTGSLLKYSG FLFGLDNPRL LTGSKN
Arabidopsis Description
CAF1-2Probable CCR4-associated factor 1 homolog 2 [Source:UniProtKB/Swiss-Prot;Acc:Q9S9P2]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.