Subcellular Localization
min:
: max
Winner_takes_all: plasma membrane, nucleus, cytosol
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 1
- cytosol 1
- plasma membrane 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Os04t0654700-02 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT3G44260.1 | Os04t0654700-02 | AT1G22920.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS7B01G235700.1 | Wheat | cytosol | 45.2 | 48.29 |
| TraesCS7D01G331400.1 | Wheat | cytosol | 44.84 | 47.91 |
| TraesCS7A01G347500.1 | Wheat | cytosol | 44.48 | 47.17 |
| TraesCS7A01G347600.1 | Wheat | cytosol | 43.06 | 45.83 |
| CDX70991 | Canola | cytosol, nucleus, plastid | 14.23 | 31.5 |
| Os09t0416800-01 | Rice | cytosol | 30.61 | 30.71 |
| Bra020179.1-P | Field mustard | nucleus | 29.18 | 30.37 |
| CDY35673 | Canola | nucleus | 28.83 | 30.0 |
| CDY09125 | Canola | nucleus | 28.83 | 30.0 |
| Bra035002.1-P | Field mustard | nucleus | 28.83 | 29.89 |
| CDY08688 | Canola | cytosol | 29.54 | 29.75 |
| CDY47299 | Canola | nucleus | 28.47 | 29.41 |
| CDX98586 | Canola | nucleus | 29.54 | 29.33 |
| AT3G44260.1 | Thale cress | cytosol | 28.83 | 28.93 |
| VIT_06s0080g01090.t01 | Wine grape | nucleus | 28.47 | 28.78 |
| CDX92371 | Canola | nucleus | 28.83 | 28.62 |
| Bra002400.1-P | Field mustard | nucleus | 28.47 | 28.47 |
| CDX88806 | Canola | cytosol | 28.83 | 28.42 |
| Bra006616.1-P | Field mustard | cytosol | 28.83 | 28.42 |
| AT5G22250.1 | Thale cress | cytosol | 28.11 | 28.42 |
| Os02t0796300-01 | Rice | cytosol | 29.18 | 27.8 |
| PGSC0003DMT400042215 | Potato | plastid | 28.11 | 27.72 |
| KRH25294 | Soybean | nucleus | 27.4 | 27.7 |
| KRH30376 | Soybean | nucleus | 27.76 | 27.46 |
| Os08t0440300-03 | Rice | cytosol | 27.4 | 26.74 |
| Solyc01g007840.2.1 | Tomato | plastid | 26.69 | 26.32 |
| KRH26669 | Soybean | endoplasmic reticulum, golgi | 28.83 | 26.21 |
| KRH22647 | Soybean | endoplasmic reticulum, vacuole | 28.47 | 25.64 |
| GSMUA_AchrUn_... | Banana | mitochondrion | 21.0 | 22.96 |
| Os10t0128300-00 | Rice | plastid | 23.49 | 22.68 |
| GSMUA_Achr8P18010_001 | Banana | mitochondrion | 20.64 | 22.39 |
| Os10t0123900-00 | Rice | extracellular, mitochondrion, nucleus | 21.71 | 22.18 |
| Os04t0684900-02 | Rice | nucleus | 25.27 | 21.58 |
| Os06t0138400-00 | Rice | nucleus, peroxisome, plastid | 27.05 | 20.27 |
| Os10t0124200-00 | Rice | cytosol | 20.28 | 19.32 |
| Os07t0169800-00 | Rice | nucleus | 28.83 | 16.2 |
Protein Annotations
| EntrezGene:107278607 | Gene3D:3.30.420.10 | MapMan:35.1 | UniProt:B9FTH1 | ProteinID:BAS97941.1 | ProteinID:EEE65782.1 |
| GO:GO:0000932 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003824 | GO:GO:0004518 | GO:GO:0004535 |
| GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 | GO:GO:0005783 |
| GO:GO:0005789 | GO:GO:0006139 | GO:GO:0006412 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009056 |
| GO:GO:0009058 | GO:GO:0009987 | GO:GO:0016020 | GO:GO:0016021 | GO:GO:0016787 | GO:GO:0017148 |
| GO:GO:0019538 | GO:GO:0030015 | GO:GO:0043928 | GO:GO:0090503 | InterPro:IPR036397 | EnsemblPlantsGene:Os06g0503900 |
| EnsemblPlants:Os06t0503900-01 | PFAM:PF04857 | PANTHER:PTHR10797 | PANTHER:PTHR10797:SF7 | InterPro:RNaseH-like_sf | InterPro:RNaseH_sf |
| InterPro:RNase_CAF1 | SUPFAM:SSF53098 | UniParc:UPI00019344C2 | RefSeq:XP_015642861.1 | SEG:seg | : |
Description
CCR4-associated factor 1-8, carbon catabolite repressor 4-associated factor 1-8, CCR4-associated factor 1K, carbon catabolite repressor 4-associated factor 1KHypothetical conserved gene. (Os06t0503900-01)
Coordinates
chr6:+:17859496..17863417
Molecular Weight (calculated)
29761.8 Da
IEP (calculated)
6.994
GRAVY (calculated)
0.125
Length
281 amino acids
Sequence
(BLAST)
(BLAST)
001: MNAAAAAPAP TMNFAAIHSV WHDNFDAESA QLLAVAPRAV HVAVSVQYPG CAVAQAGTSG RKKYGSLTAE KRYDMVKANI DELHPIQVGL AIRANDDDGD
101: SGELVVFEFN LRGFDINNPA DLRDPASIAH LRGRGVDFGR LPCAGVEPHR LRLLLLGSGL LQAWPSWATF TGAYHVGYLM KILTGAELPS GLDAFTTMAT
201: GTLGEGVYDV KRLAAEVNTA CGFSLREIAA CIGVVPVAAQ HGMVASAGAV STLQCFKALR ERLGEARVAM HGQQMCGLRA Y
101: SGELVVFEFN LRGFDINNPA DLRDPASIAH LRGRGVDFGR LPCAGVEPHR LRLLLLGSGL LQAWPSWATF TGAYHVGYLM KILTGAELPS GLDAFTTMAT
201: GTLGEGVYDV KRLAAEVNTA CGFSLREIAA CIGVVPVAAQ HGMVASAGAV STLQCFKALR ERLGEARVAM HGQQMCGLRA Y
001: MIKSEADLSD VIVIRDVWAY NLESEFDLIR GIVEDYPFIS MDTEFPGVIY KADLDVLRRG NPNYLYNLLK SNVDALSLIQ VGLTLSDADG NLPDLGGQKN
101: RRYIWEFNFR DFDVERDPHA PDSIELLRRH GIDFERNRRE GVESERFAEL MMSSGLICNE SVSWVTFHSA YDFGYLVKIL TRRQLPVALR EFLGLLRAFF
201: GDRVYDVKHI MRFCEQRLYG GLDRVARSLE VNRAVGKCHQ AGSDSLLTWQ AFQRMRDLYF VEDGAEKHAG VLYGLEVF
101: RRYIWEFNFR DFDVERDPHA PDSIELLRRH GIDFERNRRE GVESERFAEL MMSSGLICNE SVSWVTFHSA YDFGYLVKIL TRRQLPVALR EFLGLLRAFF
201: GDRVYDVKHI MRFCEQRLYG GLDRVARSLE VNRAVGKCHQ AGSDSLLTWQ AFQRMRDLYF VEDGAEKHAG VLYGLEVF
Arabidopsis Description
CAF1-11Probable CCR4-associated factor 1 homolog 11 [Source:UniProtKB/Swiss-Prot;Acc:Q9FMS6]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.