Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- cytosol 3
- nucleus 3
- plastid 1
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- plasma membrane 1
- golgi 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Bra012351.1-P | |
| Bra024548.1-P |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT3G44260.1 | Bra012351.1-P | AT1G22920.1 | 21798944 |
| AT3G44260.1 | Bra024548.1-P | AT1G22920.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY47299 | Canola | nucleus | 98.16 | 97.79 |
| AT3G44260.1 | Thale cress | cytosol | 87.08 | 84.29 |
| Bra020179.1-P | Field mustard | nucleus | 79.7 | 80.0 |
| Bra002400.1-P | Field mustard | nucleus | 80.44 | 77.58 |
| Bra006616.1-P | Field mustard | cytosol | 78.6 | 74.74 |
| VIT_06s0080g01090.t01 | Wine grape | nucleus | 76.01 | 74.1 |
| KRH25294 | Soybean | nucleus | 71.59 | 69.78 |
| KRH30376 | Soybean | nucleus | 70.85 | 67.61 |
| KRH26669 | Soybean | endoplasmic reticulum, golgi | 71.22 | 62.46 |
| KRH22647 | Soybean | endoplasmic reticulum, vacuole | 70.85 | 61.54 |
| GSMUA_Achr9P29700_001 | Banana | cytosol | 47.6 | 60.56 |
| GSMUA_Achr6P19450_001 | Banana | cytosol | 53.14 | 59.02 |
| Solyc01g007840.2.1 | Tomato | plastid | 60.89 | 57.89 |
| PGSC0003DMT400042215 | Potato | plastid | 60.52 | 57.54 |
| GSMUA_Achr6P19460_001 | Banana | cytosol | 36.53 | 57.23 |
| Bra005614.1-P | Field mustard | nucleus | 53.51 | 52.54 |
| Bra006083.1-P | Field mustard | nucleus | 52.03 | 50.72 |
| Bra009001.1-P | Field mustard | nucleus | 52.03 | 50.36 |
| Bra008439.1-P | Field mustard | nucleus | 50.18 | 49.63 |
| Bra035152.1-P | Field mustard | cytosol | 49.82 | 49.09 |
| Zm00001d026657_P001 | Maize | cytosol | 50.18 | 45.48 |
| Bra026093.1-P | Field mustard | nucleus | 50.18 | 45.48 |
| Zm00001d001774_P001 | Maize | nucleus | 48.71 | 44.44 |
| GSMUA_Achr8P18010_001 | Banana | mitochondrion | 41.33 | 43.24 |
| GSMUA_AchrUn_... | Banana | mitochondrion | 40.22 | 42.41 |
| Os04t0684900-02 | Rice | nucleus | 50.92 | 41.95 |
| EES11684 | Sorghum | nucleus | 49.45 | 40.0 |
| TraesCS2D01G597200.1 | Wheat | nucleus | 47.6 | 39.45 |
| TraesCS2A01G583000.1 | Wheat | nucleus | 46.86 | 39.2 |
| HORVU2Hr1G123480.1 | Barley | nucleus | 46.86 | 39.08 |
| TraesCS2B01G603600.1 | Wheat | cytosol | 46.86 | 39.08 |
| TraesCSU01G062600.1 | Wheat | cytosol | 36.53 | 38.52 |
| TraesCS7D01G075800.1 | Wheat | nucleus | 36.53 | 38.37 |
| Zm00001d007664_P001 | Maize | extracellular, nucleus, plastid | 17.71 | 36.92 |
| Zm00001d007662_P001 | Maize | extracellular, nucleus, plastid | 17.71 | 36.92 |
| Zm00001d007669_P001 | Maize | extracellular, nucleus, plastid | 17.71 | 36.92 |
| Zm00001d007666_P001 | Maize | extracellular, nucleus, plastid | 18.45 | 36.5 |
| Os10t0123900-00 | Rice | extracellular, mitochondrion, nucleus | 34.69 | 34.18 |
| TraesCS7A01G347500.1 | Wheat | cytosol | 32.84 | 33.58 |
| TraesCS3D01G384800.1 | Wheat | cytosol, mitochondrion, nucleus, plasma membrane | 21.4 | 33.33 |
| TraesCS7A01G347600.1 | Wheat | cytosol | 32.47 | 33.33 |
| EES10179 | Sorghum | plasma membrane, plastid | 34.32 | 33.1 |
| EER87806 | Sorghum | cytosol, nucleus, plasma membrane | 38.01 | 32.59 |
| Zm00001d048757_P001 | Maize | nucleus, plasma membrane, plastid | 34.69 | 32.19 |
| TraesCS3B01G424000.1 | Wheat | cytosol | 24.35 | 32.04 |
| Zm00001d048754_P001 | Maize | nucleus, plasma membrane, plastid | 34.69 | 31.97 |
| Zm00001d048752_P001 | Maize | nucleus, plasma membrane, plastid | 34.69 | 31.97 |
| TraesCS7D01G331400.1 | Wheat | cytosol | 31.0 | 31.94 |
| Zm00001d048746_P001 | Maize | nucleus, plasma membrane, plastid | 34.32 | 31.85 |
| TraesCS7B01G235700.1 | Wheat | cytosol | 30.63 | 31.56 |
| Zm00001d048748_P001 | Maize | nucleus, plasma membrane, plastid | 33.95 | 31.4 |
| Os10t0128300-00 | Rice | plastid | 33.21 | 30.93 |
| Zm00001d007654_P001 | Maize | nucleus, plasma membrane, plastid | 32.84 | 30.9 |
| Os10t0124200-00 | Rice | cytosol | 32.84 | 30.17 |
| TraesCS3D01G406100.1 | Wheat | nucleus, plasma membrane, plastid | 30.26 | 28.98 |
| Os06t0503900-01 | Rice | cytosol, nucleus, plasma membrane | 29.89 | 28.83 |
| Os06t0138400-00 | Rice | nucleus, peroxisome, plastid | 39.85 | 28.8 |
| TraesCS3A01G411800.1 | Wheat | mitochondrion, plastid | 31.37 | 28.33 |
| OQU83919 | Sorghum | mitochondrion | 25.46 | 28.28 |
| KXG20050 | Sorghum | plastid | 28.04 | 28.25 |
| TraesCS6D01G318000.1 | Wheat | plastid | 29.15 | 27.92 |
| Zm00001d002885_P001 | Maize | plastid | 32.1 | 27.27 |
| TraesCS4A01G243700.1 | Wheat | plastid | 29.52 | 26.85 |
| TraesCS4A01G243900.1 | Wheat | plastid | 29.52 | 26.58 |
| TraesCS4B01G071200.1 | Wheat | plastid | 29.15 | 26.25 |
| EES09326 | Sorghum | mitochondrion, nucleus | 28.78 | 26.17 |
| TraesCS4A01G243800.1 | Wheat | plastid | 28.78 | 26.17 |
| TraesCS4B01G071000.1 | Wheat | plastid | 28.41 | 26.1 |
| TraesCS3B01G444600.1 | Wheat | mitochondrion | 28.78 | 26.09 |
| TraesCS4D01G069900.1 | Wheat | plastid | 28.78 | 25.83 |
| TraesCS4B01G071100.1 | Wheat | plastid | 28.78 | 25.83 |
| Bra032421.1-P | Field mustard | cytosol, mitochondrion, nucleus | 34.32 | 25.34 |
| TraesCS7A01G082100.1 | Wheat | nucleus | 40.59 | 25.17 |
| OQU83918 | Sorghum | cytosol, extracellular, nucleus | 17.34 | 25.0 |
| OQU76452 | Sorghum | plastid | 14.76 | 24.54 |
| KXG22837 | Sorghum | mitochondrion | 31.0 | 24.28 |
| TraesCS3B01G445400.1 | Wheat | plastid | 29.15 | 23.87 |
| KXG38897 | Sorghum | plastid | 29.52 | 23.46 |
| Os07t0169800-00 | Rice | nucleus | 43.17 | 23.4 |
| Zm00001d029981_P001 | Maize | plastid | 30.26 | 22.1 |
| OQU76454 | Sorghum | plastid | 16.24 | 21.67 |
| Zm00001d031508_P001 | Maize | cytosol | 31.0 | 21.32 |
| Zm00001d007893_P001 | Maize | nucleus | 36.53 | 19.84 |
| EER98038 | Sorghum | plastid | 40.22 | 18.92 |
| OQU76453 | Sorghum | plastid | 16.24 | 14.62 |
| Bra023214.1-P | Field mustard | cytosol | 25.46 | 12.5 |
Protein Annotations
| MapMan:16.8.2.1.2.2 | Gene3D:3.30.420.10 | EnsemblPlantsGene:Bra035002 | EnsemblPlants:Bra035002.1 | EnsemblPlants:Bra035002.1-P | GO:GO:0000289 |
| GO:GO:0002213 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003824 | GO:GO:0004518 | GO:GO:0005488 |
| GO:GO:0006139 | GO:GO:0006950 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0008408 | GO:GO:0009056 |
| GO:GO:0009605 | GO:GO:0009607 | GO:GO:0009611 | GO:GO:0009987 | GO:GO:0016787 | GO:GO:0042742 |
| GO:GO:0090305 | InterPro:IPR036397 | UniProt:M4F1Q5 | PFAM:PF04857 | PANTHER:PTHR10797 | PANTHER:PTHR10797:SF3 |
| InterPro:RNaseH-like_sf | InterPro:RNaseH_sf | InterPro:RNase_CAF1 | SUPFAM:SSF53098 | UniParc:UPI000253E5CC | : |
Description
AT3G44260 (E=2e-134) | CCR4-NOT transcription complex protein, putative
Coordinates
chrScaffold000100:-:787805..788620
Molecular Weight (calculated)
31168.3 Da
IEP (calculated)
4.985
GRAVY (calculated)
-0.245
Length
271 amino acids
Sequence
(BLAST)
(BLAST)
001: MTIINLGGAI AIREVWAENL ESEFEVISGI IDDYPFVSMD TEFPGVIFKS DLRRGNPADL YRLLKSNVDA LSLIQVGLTL SDADGNLPDL GDGRRFIWEF
101: NFKDFDVARD AHAPDSIELL RRQGIDFERN RRDGVDSERF AELMMSSGLV CNEEVSWVTF HSAYDFAYLM KILTRRELPC ALGEFQRVMR ALFGERVYDM
201: KHMMRFCERK LYGGLDRVAR TLEVNREVGK CHQAGSDSLL TWHAFQKMRD LYFHQDGPEK HAGVLYGLEV F
101: NFKDFDVARD AHAPDSIELL RRQGIDFERN RRDGVDSERF AELMMSSGLV CNEEVSWVTF HSAYDFAYLM KILTRRELPC ALGEFQRVMR ALFGERVYDM
201: KHMMRFCERK LYGGLDRVAR TLEVNREVGK CHQAGSDSLL TWHAFQKMRD LYFHQDGPEK HAGVLYGLEV F
001: MAIIKPNRDL KPDGVTVVTR EVWAENLESE FELISEIIDD YPFISMDTEF PGVIFKSDLR FTNPDDLYTL LKANVDALSL IQVGLTLSDV NGNLPDLGDD
101: LHRGFIWEFN FRDFDVARDA HAPDSIELLR RQGIDFERNC RDGVESERFA ELMMSSGLVC NEEVSWVTFH SAYDFGYLMK ILTRRELPGA LGEFKRVMRV
201: LFGERVYDVK HMMKFCERRL FGGLDRVART LEVNRAVGKC HQAGSDSLLT WHAFQRMRDL YFVQDGPEKH AGVLYGLEVF
101: LHRGFIWEFN FRDFDVARDA HAPDSIELLR RQGIDFERNC RDGVESERFA ELMMSSGLVC NEEVSWVTFH SAYDFGYLMK ILTRRELPGA LGEFKRVMRV
201: LFGERVYDVK HMMKFCERRL FGGLDRVART LEVNRAVGKC HQAGSDSLLT WHAFQRMRDL YFVQDGPEKH AGVLYGLEVF
Arabidopsis Description
CAF1-9Probable CCR4-associated factor 1 homolog 9 [Source:UniProtKB/Swiss-Prot;Acc:Q9LXM2]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.