Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- plastid 4
- nucleus 1
- cytosol 1
- plasma membrane 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Zm00001d002027_P002 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT3G44260.1 | Zm00001d002027_P002 | AT1G22920.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KXG38897 | Sorghum | plastid | 71.97 | 78.3 |
| TraesCS6D01G318000.1 | Wheat | plastid | 38.27 | 50.18 |
| TraesCS4B01G071000.1 | Wheat | plastid | 39.62 | 49.83 |
| TraesCS3D01G384800.1 | Wheat | cytosol, mitochondrion, nucleus, plasma membrane | 23.18 | 49.43 |
| TraesCS4D01G069900.1 | Wheat | plastid | 39.35 | 48.34 |
| TraesCS4A01G243900.1 | Wheat | plastid | 39.08 | 48.17 |
| TraesCS4B01G071200.1 | Wheat | plastid | 39.08 | 48.17 |
| TraesCS4B01G071100.1 | Wheat | plastid | 39.08 | 48.01 |
| TraesCS3A01G411800.1 | Wheat | mitochondrion, plastid | 38.81 | 48.0 |
| TraesCS3D01G406100.1 | Wheat | nucleus, plasma membrane, plastid | 36.39 | 47.7 |
| TraesCS4A01G243800.1 | Wheat | plastid | 38.27 | 47.65 |
| TraesCS4A01G243700.1 | Wheat | plastid | 38.27 | 47.65 |
| TraesCS3B01G424000.1 | Wheat | cytosol | 25.88 | 46.6 |
| TraesCS3B01G444600.1 | Wheat | mitochondrion | 37.47 | 46.49 |
| TraesCS3B01G445400.1 | Wheat | plastid | 37.74 | 42.3 |
| CDX70991 | Canola | cytosol, nucleus, plastid | 11.86 | 34.65 |
| Bra020179.1-P | Field mustard | nucleus | 23.45 | 32.22 |
| Zm00001d048752_P001 | Maize | nucleus, plasma membrane, plastid | 25.34 | 31.97 |
| Zm00001d048754_P001 | Maize | nucleus, plasma membrane, plastid | 25.34 | 31.97 |
| Zm00001d007654_P001 | Maize | nucleus, plasma membrane, plastid | 24.8 | 31.94 |
| CDY35673 | Canola | nucleus | 23.18 | 31.85 |
| Zm00001d048746_P001 | Maize | nucleus, plasma membrane, plastid | 25.07 | 31.85 |
| Zm00001d048757_P001 | Maize | nucleus, plasma membrane, plastid | 25.07 | 31.85 |
| Zm00001d048748_P001 | Maize | nucleus, plasma membrane, plastid | 25.07 | 31.74 |
| CDY09125 | Canola | nucleus | 22.91 | 31.48 |
| Zm00001d026657_P001 | Maize | cytosol | 24.53 | 30.43 |
| Bra035002.1-P | Field mustard | nucleus | 22.1 | 30.26 |
| VIT_06s0080g01090.t01 | Wine grape | nucleus | 22.64 | 30.22 |
| Solyc01g007840.2.1 | Tomato | plastid | 23.18 | 30.18 |
| PGSC0003DMT400042215 | Potato | plastid | 23.18 | 30.18 |
| Zm00001d020486_P001 | Maize | extracellular | 22.64 | 30.11 |
| Zm00001d052031_P001 | Maize | cytosol | 23.18 | 29.97 |
| Zm00001d002885_P001 | Maize | plastid | 25.61 | 29.78 |
| CDY47299 | Canola | nucleus | 21.83 | 29.78 |
| Zm00001d001774_P001 | Maize | nucleus | 23.72 | 29.63 |
| KRH25294 | Soybean | nucleus | 22.1 | 29.5 |
| AT3G44260.1 | Thale cress | cytosol | 22.1 | 29.29 |
| Zm00001d007669_P001 | Maize | extracellular, nucleus, plastid | 10.24 | 29.23 |
| Zm00001d007662_P001 | Maize | extracellular, nucleus, plastid | 10.24 | 29.23 |
| Zm00001d007664_P001 | Maize | extracellular, nucleus, plastid | 10.24 | 29.23 |
| CDY08688 | Canola | cytosol | 21.83 | 29.03 |
| CDX98586 | Canola | nucleus | 22.1 | 28.98 |
| CDX88806 | Canola | cytosol | 22.1 | 28.77 |
| KRH30376 | Soybean | nucleus | 21.83 | 28.52 |
| Bra002400.1-P | Field mustard | nucleus | 21.56 | 28.47 |
| Zm00001d007666_P001 | Maize | extracellular, nucleus, plastid | 10.51 | 28.47 |
| Bra006616.1-P | Field mustard | cytosol | 21.83 | 28.42 |
| AT5G22250.1 | Thale cress | cytosol | 21.29 | 28.42 |
| CDX92371 | Canola | nucleus | 21.56 | 28.27 |
| GSMUA_AchrUn_... | Banana | mitochondrion | 18.87 | 27.24 |
| GSMUA_Achr8P18010_001 | Banana | mitochondrion | 18.6 | 26.64 |
| Zm00001d050433_P001 | Maize | nucleus | 19.95 | 26.43 |
| KRH26669 | Soybean | endoplasmic reticulum, golgi | 21.56 | 25.89 |
| KRH22647 | Soybean | endoplasmic reticulum, vacuole | 21.29 | 25.32 |
| Zm00001d018378_P001 | Maize | nucleus | 5.39 | 25.32 |
| Zm00001d031508_P001 | Maize | cytosol | 22.1 | 20.81 |
| Zm00001d007893_P001 | Maize | nucleus | 25.88 | 19.24 |
| Zm00001d032158_P002 | Maize | plastid | 20.22 | 18.84 |
Protein Annotations
| EnsemblPlants:Zm00001d029981_P001 | EnsemblPlants:Zm00001d029981_T001 | EnsemblPlantsGene:Zm00001d029981 | Gene3D:3.30.420.10 | GO:GO:0003674 | GO:GO:0003676 |
| GO:GO:0005488 | InterPro:IPR036397 | InterPro:RNaseH-like_sf | InterPro:RNaseH_sf | InterPro:RNase_CAF1 | PANTHER:PTHR10797 |
| PANTHER:PTHR10797:SF7 | PFAM:PF04857 | ProteinID:ONL99931.1 | SEG:seg | SUPFAM:SSF53098 | UniParc:UPI0008427E65 |
| UniProt:A0A1D6K8T2 | MapMan:35.1 | : | : | : | : |
Description
Putative CCR4-associated factor 1 homolog 3
Coordinates
chr1:-:97337143..97338258
Molecular Weight (calculated)
40216.7 Da
IEP (calculated)
8.474
GRAVY (calculated)
0.173
Length
371 amino acids
Sequence
(BLAST)
(BLAST)
001: MPPQSAPMPT VTMIPPQFFT PMPTVPMTAL QPAPMLPMMP PQFFTTMPTV PITPLQPAQL STPMPIVPTT PLQPAPMYTV TTMPSQSAPM PTVPMMPPQF
101: FTPMPTVPVM PPQPAPFPVP VHEVWADNFH EVEAAVGYFA AHARFVAVGL HYPGVVHGAD HRGLVASTAE QRYATVKANV DALKPLQLGL AVITEAREIA
201: AWEFNLSDFD PTVDPHAVRS IAYLRRRGLR CDELRLRGIP VAKLTRVLRL ICRPGVSWVT HTGAYHVAYL MKVINGGNKL PGDMAGFLAA VRLSLGEDVY
301: DVATMASDCQ DMPAGLEGIA SRLGVAPPLS MHPLAGAGSV LALQAFMELR FHVFRGNVTR YRGVLQGLQV T
101: FTPMPTVPVM PPQPAPFPVP VHEVWADNFH EVEAAVGYFA AHARFVAVGL HYPGVVHGAD HRGLVASTAE QRYATVKANV DALKPLQLGL AVITEAREIA
201: AWEFNLSDFD PTVDPHAVRS IAYLRRRGLR CDELRLRGIP VAKLTRVLRL ICRPGVSWVT HTGAYHVAYL MKVINGGNKL PGDMAGFLAA VRLSLGEDVY
301: DVATMASDCQ DMPAGLEGIA SRLGVAPPLS MHPLAGAGSV LALQAFMELR FHVFRGNVTR YRGVLQGLQV T
001: MIKSEADLSD VIVIRDVWAY NLESEFDLIR GIVEDYPFIS MDTEFPGVIY KADLDVLRRG NPNYLYNLLK SNVDALSLIQ VGLTLSDADG NLPDLGGQKN
101: RRYIWEFNFR DFDVERDPHA PDSIELLRRH GIDFERNRRE GVESERFAEL MMSSGLICNE SVSWVTFHSA YDFGYLVKIL TRRQLPVALR EFLGLLRAFF
201: GDRVYDVKHI MRFCEQRLYG GLDRVARSLE VNRAVGKCHQ AGSDSLLTWQ AFQRMRDLYF VEDGAEKHAG VLYGLEVF
101: RRYIWEFNFR DFDVERDPHA PDSIELLRRH GIDFERNRRE GVESERFAEL MMSSGLICNE SVSWVTFHSA YDFGYLVKIL TRRQLPVALR EFLGLLRAFF
201: GDRVYDVKHI MRFCEQRLYG GLDRVARSLE VNRAVGKCHQ AGSDSLLTWQ AFQRMRDLYF VEDGAEKHAG VLYGLEVF
Arabidopsis Description
CAF1-11Probable CCR4-associated factor 1 homolog 11 [Source:UniProtKB/Swiss-Prot;Acc:Q9FMS6]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.