Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 2
- mitochondrion 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| EES13910 | Sorghum | nucleus | 87.14 | 85.31 |
| Zm00001d032158_P002 | Maize | plastid | 86.43 | 60.8 |
| Os08t0440300-03 | Rice | cytosol | 60.36 | 58.68 |
| Zm00001d020486_P001 | Maize | extracellular | 58.21 | 58.42 |
| TraesCS7A01G297000.1 | Wheat | nucleus | 60.71 | 57.82 |
| TraesCS7D01G291400.1 | Wheat | nucleus | 60.36 | 57.48 |
| TraesCS7B01G198900.1 | Wheat | nucleus | 60.0 | 57.14 |
| GSMUA_Achr3P04600_001 | Banana | nucleus | 49.64 | 56.73 |
| HORVU7Hr1G067520.3 | Barley | nucleus | 60.71 | 56.67 |
| KRH52356 | Soybean | nucleus | 55.0 | 56.41 |
| KRH61689 | Soybean | nucleus | 55.0 | 56.41 |
| PGSC0003DMT400073328 | Potato | nucleus | 54.64 | 56.04 |
| PGSC0003DMT400036620 | Potato | nucleus | 54.64 | 55.84 |
| GSMUA_Achr9P13270_001 | Banana | cytosol | 54.64 | 55.64 |
| Solyc06g068410.2.1 | Tomato | nucleus | 50.0 | 55.56 |
| KRH47360 | Soybean | nucleus | 54.64 | 55.23 |
| Solyc03g117030.1.1 | Tomato | nucleus | 53.93 | 55.11 |
| VIT_09s0070g00060.t01 | Wine grape | nucleus | 53.93 | 55.11 |
| Bra008439.1-P | Field mustard | nucleus | 53.57 | 54.74 |
| CDY53227 | Canola | nucleus | 53.57 | 54.74 |
| CDY63973 | Canola | nucleus | 53.57 | 54.74 |
| Bra035152.1-P | Field mustard | cytosol | 53.57 | 54.55 |
| CDX87343 | Canola | cytosol | 53.57 | 54.55 |
| AT5G10960.1 | Thale cress | nucleus | 53.93 | 54.51 |
| CDX70376 | Canola | nucleus | 53.57 | 54.35 |
| CDY39943 | Canola | cytosol | 53.21 | 54.18 |
| CDY64914 | Canola | nucleus | 53.21 | 53.99 |
| Bra005614.1-P | Field mustard | nucleus | 53.21 | 53.99 |
| AT2G32070.1 | Thale cress | nucleus | 52.86 | 53.82 |
| KRH44539 | Soybean | cytosol | 53.93 | 53.74 |
| Zm00001d052031_P001 | Maize | cytosol | 55.0 | 53.66 |
| CDY12234 | Canola | nucleus | 52.86 | 53.62 |
| Bra006083.1-P | Field mustard | nucleus | 53.21 | 53.6 |
| CDX78405 | Canola | nucleus | 53.21 | 53.6 |
| CDX69796 | Canola | nucleus | 53.21 | 53.6 |
| VIT_04s0008g05850.t01 | Wine grape | nucleus | 52.14 | 53.48 |
| PGSC0003DMT400058833 | Potato | cytosol | 52.14 | 53.28 |
| Bra009001.1-P | Field mustard | nucleus | 53.21 | 53.21 |
| VIT_11s0037g00100.t01 | Wine grape | nucleus | 51.07 | 52.96 |
| CDX97069 | Canola | nucleus | 52.86 | 52.86 |
| AT1G80780.3 | Thale cress | cytosol | 53.93 | 52.8 |
| Solyc11g045130.1.1 | Tomato | cytosol | 50.71 | 51.82 |
| CDY35049 | Canola | nucleus | 49.64 | 50.36 |
| Zm00001d018378_P001 | Maize | nucleus | 13.93 | 49.37 |
| AT1G15920.2 | Thale cress | nucleus | 50.36 | 49.3 |
| KRH28796 | Soybean | nucleus | 17.14 | 48.98 |
| Bra026093.1-P | Field mustard | nucleus | 49.64 | 46.49 |
| Zm00001d026657_P001 | Maize | cytosol | 40.0 | 37.46 |
| Zm00001d001774_P001 | Maize | nucleus | 38.21 | 36.03 |
| CDY12236 | Canola | cytosol, extracellular | 46.43 | 31.55 |
| CDY33367 | Canola | cytosol, extracellular | 50.36 | 31.06 |
| Zm00001d048754_P001 | Maize | nucleus, plasma membrane, plastid | 28.93 | 27.55 |
| Zm00001d048752_P001 | Maize | nucleus, plasma membrane, plastid | 28.93 | 27.55 |
| Zm00001d048757_P001 | Maize | nucleus, plasma membrane, plastid | 28.21 | 27.05 |
| Zm00001d048746_P001 | Maize | nucleus, plasma membrane, plastid | 28.21 | 27.05 |
| Zm00001d007666_P001 | Maize | extracellular, nucleus, plastid | 13.21 | 27.01 |
| Zm00001d048748_P001 | Maize | nucleus, plasma membrane, plastid | 28.21 | 26.96 |
| Zm00001d007664_P001 | Maize | extracellular, nucleus, plastid | 12.5 | 26.92 |
| Zm00001d007669_P001 | Maize | extracellular, nucleus, plastid | 12.5 | 26.92 |
| Zm00001d007662_P001 | Maize | extracellular, nucleus, plastid | 12.5 | 26.92 |
| Zm00001d007654_P001 | Maize | nucleus, plasma membrane, plastid | 27.14 | 26.39 |
| Zm00001d002885_P001 | Maize | plastid | 26.79 | 23.51 |
| Zm00001d029981_P001 | Maize | plastid | 26.43 | 19.95 |
| Zm00001d031508_P001 | Maize | cytosol | 26.43 | 18.78 |
| Zm00001d007893_P001 | Maize | nucleus | 30.0 | 16.83 |
Protein Annotations
| EMBL:BT035182 | EMBL:BT063532 | EMBL:EU966960 | EnsemblPlants:Zm00001d050433_P001 | EnsemblPlants:Zm00001d050433_T001 | EnsemblPlantsGene:Zm00001d050433 |
| EntrezGene:100193030 | Gene3D:3.30.420.10 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0005488 | InterPro:IPR036397 |
| InterPro:RNaseH-like_sf | InterPro:RNaseH_sf | InterPro:RNase_CAF1 | PANTHER:PTHR10797 | PANTHER:PTHR10797:SF15 | PFAM:PF04857 |
| ProteinID:AQK52516.1 | SUPFAM:SSF53098 | UniParc:UPI00017B681C | UniProt:B4FDJ4 | MapMan:35.1 | : |
Description
Probable CCR4-associated factor 1 homolog 11
Coordinates
chr4:-:87612524..87613366
Molecular Weight (calculated)
31284.9 Da
IEP (calculated)
4.626
GRAVY (calculated)
0.053
Length
280 amino acids
Sequence
(BLAST)
(BLAST)
001: MDAPAPAVEI REVWASNLEE EFEVIRDVVD AYPYVGMDTE FPGFVVQPIA EYRFTCDRIY AGLEGNVNVL KLIQLGLTFS NEAGTLPPCG TGGQCCIWQF
101: NFRGFNPHTD PYSPDSIDLL RRSGIDFDLF AVEGVDSTRF AELMMSSGIV LNDDVQWVTF HGSHDFGYLL RLLTGREMPN TLDEFLKLTK IFFPVMYDVK
201: HLMKFCGPGL YGGLSRLGKL LKVERVGTGH QAGSDCLLTL QCFMKLKQLY LKESVKLYDG LLFGLIPGEV EIKTAPPPIG
101: NFRGFNPHTD PYSPDSIDLL RRSGIDFDLF AVEGVDSTRF AELMMSSGIV LNDDVQWVTF HGSHDFGYLL RLLTGREMPN TLDEFLKLTK IFFPVMYDVK
201: HLMKFCGPGL YGGLSRLGKL LKVERVGTGH QAGSDCLLTL QCFMKLKQLY LKESVKLYDG LLFGLIPGEV EIKTAPPPIG
001: MSLFLKDDSI QIREVWNDNL QEEMDLIRDV VDDFPYVAMD TEFPGIVVRP VGTFKSNADY HYETLKTNVN ILKMIQLGLT FSNEQGNLPT CGTDKYCIWQ
101: FNFREFDLDS DIFALDSIEL LKQSGIDLAK NTLDGIDSKR FAELLMSSGI VLNENVHWVT FHSGYDFGYL LKLLTCQNLP DSQTDFFKLI NVYFPTVYDI
201: KHLMKFCNSL HGGLNKLAEL LEVERVGICH QAGSDSLLTS CTFRKLKENF FVGPLHKYSG VLYGLGVENE ANGKNVSYRM DMVAWA
101: FNFREFDLDS DIFALDSIEL LKQSGIDLAK NTLDGIDSKR FAELLMSSGI VLNENVHWVT FHSGYDFGYL LKLLTCQNLP DSQTDFFKLI NVYFPTVYDI
201: KHLMKFCNSL HGGLNKLAEL LEVERVGICH QAGSDSLLTS CTFRKLKENF FVGPLHKYSG VLYGLGVENE ANGKNVSYRM DMVAWA
Arabidopsis Description
Polynucleotidyl transferase, ribonuclease H-like superfamily protein [Source:UniProtKB/TrEMBL;Acc:F4HU15]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.