CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

cytosol 3
nucleus 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	cytosol
EpiLoc:	cytosol
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH61689	Soybean	nucleus	97.44	97.44
VIT_04s0008g05850.t01	Wine grape	nucleus	87.18	87.18
PGSC0003DMT400058833	Potato	cytosol	84.62	84.31
KRH28796	Soybean	nucleus	30.04	83.67
KRH47360	Soybean	nucleus	84.62	83.39
Solyc11g045130.1.1	Tomato	cytosol	82.05	81.75
KRH44539	Soybean	cytosol	83.52	81.14
GSMUA_Achr3P04600_001	Banana	nucleus	72.16	80.41
GSMUA_Achr9P13270_001	Banana	cytosol	80.95	80.36
AT2G32070.1	Thale cress	nucleus	77.29	76.73
CDY64914	Canola	nucleus	76.92	76.09
Bra005614.1-P	Field mustard	nucleus	76.92	76.09
Bra008439.1-P	Field mustard	nucleus	75.82	75.55
CDY53227	Canola	nucleus	75.82	75.55
CDY63973	Canola	nucleus	75.46	75.18
CDY12234	Canola	nucleus	75.82	75.0
AT5G10960.1	Thale cress	nucleus	75.82	74.73
CDX70376	Canola	nucleus	75.09	74.28
Bra035152.1-P	Field mustard	cytosol	74.73	74.18
CDX87343	Canola	cytosol	74.73	74.18
CDY39943	Canola	cytosol	74.73	74.18
CDX78405	Canola	nucleus	75.09	73.74
Bra006083.1-P	Field mustard	nucleus	75.09	73.74
CDX69796	Canola	nucleus	74.36	73.02
Bra009001.1-P	Field mustard	nucleus	73.99	72.14
CDX97069	Canola	nucleus	73.99	72.14
AT1G80780.3	Thale cress	cytosol	74.36	70.98
EES05957	Sorghum	nucleus	73.26	69.44
TraesCS6A01G358700.1	Wheat	cytosol	72.53	68.51
TraesCS6B01G391400.1	Wheat	cytosol	72.53	68.51
TraesCS6D01G341500.1	Wheat	cytosol	72.53	68.51
HORVU6Hr1G085410.1	Barley	cytosol	72.53	68.51
Zm00001d052031_P001	Maize	cytosol	71.79	68.29
Os09t0416800-01	Rice	cytosol	69.96	68.21
TraesCS5D01G233200.1	Wheat	cytosol	69.23	67.74
TraesCS5B01G224400.1	Wheat	cytosol	69.23	67.74
TraesCS5A01G225900.1	Wheat	cytosol	69.23	67.74
EER96736	Sorghum	nucleus	69.23	67.74
Os02t0796300-01	Rice	cytosol	72.53	67.12
Zm00001d020486_P001	Maize	extracellular	67.4	65.95
GSMUA_Achr4P04150_001	Banana	cytosol	63.37	64.31
GSMUA_Achr4P04220_001	Banana	nucleus	63.0	63.94
GSMUA_Achr4P11450_001	Banana	cytosol	62.27	63.2
GSMUA_Achr9P22440_001	Banana	cytosol	57.88	62.7
TraesCS7B01G198900.1	Wheat	nucleus	65.2	60.54
TraesCS7D01G291400.1	Wheat	nucleus	64.84	60.2
TraesCS7A01G297000.1	Wheat	nucleus	64.84	60.2
AT1G15920.2	Thale cress	nucleus	62.27	59.44
HORVU7Hr1G067520.3	Barley	nucleus	64.84	59.0
GSMUA_Achr2P05120_001	Banana	cytosol	55.31	58.75
Os08t0440300-03	Rice	cytosol	61.54	58.33
EES13910	Sorghum	nucleus	59.71	56.99
CDY35049	Canola	nucleus	56.78	56.16
Zm00001d018378_P001	Maize	nucleus	16.12	55.7
Zm00001d050433_P001	Maize	nucleus	56.41	55.0
KRH39619	Soybean	cytosol, nucleus, plastid	28.94	54.86
KRG96235	Soybean	nucleus	53.48	53.28
KRH67979	Soybean	nucleus	52.75	52.55
Bra026093.1-P	Field mustard	nucleus	56.78	51.84
KRH25294	Soybean	nucleus	52.01	51.08
KRH30376	Soybean	nucleus	53.11	51.06
KRH26669	Soybean	endoplasmic reticulum, golgi	54.58	48.22
GSMUA_Achr1P10040_001	Banana	nucleus	49.08	48.03
KRH22647	Soybean	endoplasmic reticulum, vacuole	54.21	47.44
Zm00001d032158_P002	Maize	plastid	59.34	40.7
CDY12236	Canola	cytosol, extracellular	56.78	37.62
CDY33367	Canola	cytosol, extracellular	57.14	34.36

Protein Annotations

EntrezGene:100798365	Gene3D:3.30.420.10	MapMan:35.1	EMBL:ACUP02003419	EnsemblPlantsGene:GLYMA_06G063300	GO:GO:0000932
GO:GO:0003674	GO:GO:0003676	GO:GO:0003824	GO:GO:0004518	GO:GO:0004535	GO:GO:0005488
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0006139	GO:GO:0006412
GO:GO:0008150	GO:GO:0008152	GO:GO:0009056	GO:GO:0009058	GO:GO:0009987	GO:GO:0016787
GO:GO:0017148	GO:GO:0019538	GO:GO:0030015	GO:GO:0043928	GO:GO:0090503	UniProt:I1K8P4
InterPro:IPR036397	EnsemblPlants:KRH52356	ProteinID:KRH52356	ProteinID:KRH52356.1	PFAM:PF04857	PANTHER:PTHR10797
PANTHER:PTHR10797:SF31	InterPro:RNaseH-like_sf	InterPro:RNaseH_sf	InterPro:RNase_CAF1	SUPFAM:SSF53098	UniParc:UPI0001BA91EC

Description

hypothetical protein

Coordinates

chr6:+:4788842..4791028

Molecular Weight (calculated)

30970.9 Da

IEP (calculated)

4.523

GRAVY (calculated)

-0.121

Length

273 amino acids

Sequence
(BLAST)

001: MSILPKGDSV QIREVWNDNL EEEFALIREI VDEYNYVAMD TEFPGVVLRP VGNFKNINDY NYQTLKDNVD MLKLIQLGLT FSDENGNLPT CGTESTCIWQ
101: FNFREFNISE DIFASDSIEL LRQCGIDFKK NSEKGIDVNR FGELLMSSGI VLNDAVHWVT FHSGYDFGYL LKLLTCRSLP ETQAGFFDLI KMYFPMVYDI
201: KHLMKFCNSL HGGLNKLAEL LEVERVGVCH QAGSDSLLTS CTFRKLRDAF FSGSTEKYAG VLYGLGVESG QTN

Best Arabidopsis Sequence Match ( AT2G32070.1 )
(BLAST)

001: MSLFLKDDSI QIREVWNDNL ESEMALIREV VDDFPFVAMD TEFPGIVCRP VGTFKTNTEY HYETLKTNVN ILKMIQLGLT FSDEKGNLPT CGTDNKYCIW
101: QFNFREFDLE SDIYATDSIE LLRQSGIDFV KNNEFGIDSK RFAELLMSSG IVLNENVHWV TFHSGYDFGY LLKLLTCQNL PETQTGFFEM ISVYFPRVYD
201: IKHLMKFCNS LHGGLNKLAE LLDVERVGIC HQAGSDSLLT SCTFRKLQEN FFIGSMEKYS GVLYGLGVEN GQIVH

Arabidopsis Description

CAF1-7Probable CCR4-associated factor 1 homolog 7 [Source:UniProtKB/Swiss-Prot;Acc:Q9SKZ2]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.