CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 4
nucleus 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	cytosol
EpiLoc:	cytosol
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH47360	Soybean	nucleus	96.09	97.47
KRH61689	Soybean	nucleus	81.85	84.25
KRH52356	Soybean	nucleus	81.14	83.52
GSMUA_Achr3P04600_001	Banana	nucleus	70.82	81.22
GSMUA_Achr9P13270_001	Banana	cytosol	78.65	80.36
AT2G32070.1	Thale cress	nucleus	76.87	78.55
Bra005614.1-P	Field mustard	nucleus	76.87	78.26
CDY64914	Canola	nucleus	76.87	78.26
CDY12234	Canola	nucleus	76.87	78.26
Bra008439.1-P	Field mustard	nucleus	76.16	78.1
CDY53227	Canola	nucleus	76.16	78.1
CDY63973	Canola	nucleus	75.8	77.74
Bra035152.1-P	Field mustard	cytosol	75.8	77.45
CDX87343	Canola	cytosol	75.8	77.45
CDY39943	Canola	cytosol	75.44	77.09
AT1G80780.3	Thale cress	cytosol	75.44	74.13
AT5G10960.1	Thale cress	nucleus	69.75	70.76
CDX69796	Canola	nucleus	69.39	70.14
CDX70376	Canola	nucleus	68.68	69.93
CDX78405	Canola	nucleus	69.04	69.78
Bra006083.1-P	Field mustard	nucleus	69.04	69.78
Bra009001.1-P	Field mustard	nucleus	69.39	69.64
EES05957	Sorghum	nucleus	71.17	69.44
KRH28796	Soybean	nucleus	24.2	69.39
CDX97069	Canola	nucleus	69.04	69.29
TraesCS5D01G233200.1	Wheat	cytosol	68.33	68.82
TraesCS5B01G224400.1	Wheat	cytosol	68.33	68.82
TraesCS5A01G225900.1	Wheat	cytosol	68.33	68.82
Zm00001d052031_P001	Maize	cytosol	70.11	68.64
TraesCS6D01G341500.1	Wheat	cytosol	70.11	68.17
TraesCS6B01G391400.1	Wheat	cytosol	70.11	68.17
HORVU6Hr1G085410.1	Barley	cytosol	70.11	68.17
TraesCS6A01G358700.1	Wheat	cytosol	70.11	68.17
Os09t0416800-01	Rice	cytosol	67.62	67.86
EER96736	Sorghum	nucleus	67.26	67.74
Os02t0796300-01	Rice	cytosol	70.11	66.78
Zm00001d020486_P001	Maize	extracellular	65.48	65.95
GSMUA_Achr4P11450_001	Banana	cytosol	59.79	62.45
GSMUA_Achr9P22440_001	Banana	cytosol	55.87	62.3
GSMUA_Achr4P04150_001	Banana	cytosol	59.07	61.71
GSMUA_Achr4P04220_001	Banana	nucleus	58.72	61.34
AT1G15920.2	Thale cress	nucleus	62.28	61.19
TraesCS7B01G198900.1	Wheat	nucleus	62.28	59.52
TraesCS7A01G297000.1	Wheat	nucleus	61.92	59.18
TraesCS7D01G291400.1	Wheat	nucleus	61.57	58.84
HORVU7Hr1G067520.3	Barley	nucleus	61.57	57.67
CDY35049	Canola	nucleus	55.87	56.88
Os08t0440300-03	Rice	cytosol	58.01	56.6
EES13910	Sorghum	nucleus	56.94	55.94
GSMUA_Achr2P05120_001	Banana	cytosol	50.53	55.25
Zm00001d050433_P001	Maize	nucleus	53.74	53.93
KRH39619	Soybean	cytosol, nucleus, plastid	27.4	53.47
Bra026093.1-P	Field mustard	nucleus	55.87	52.51
KRG96235	Soybean	nucleus	50.89	52.19
Zm00001d018378_P001	Maize	nucleus	14.59	51.9
KRH67979	Soybean	nucleus	50.53	51.82
KRH25294	Soybean	nucleus	49.82	50.36
KRH30376	Soybean	nucleus	50.89	50.35
KRH26669	Soybean	endoplasmic reticulum, golgi	52.31	47.57
GSMUA_Achr1P10040_001	Banana	nucleus	46.62	46.95
KRH22647	Soybean	endoplasmic reticulum, vacuole	50.89	45.83
Zm00001d032158_P002	Maize	plastid	56.23	39.7
CDY12236	Canola	cytosol, extracellular	56.23	38.35
CDY33367	Canola	cytosol, extracellular	56.94	35.24

Protein Annotations

EntrezGene:100799461	Gene3D:3.30.420.10	MapMan:35.1	EMBL:ACUP02004936	EnsemblPlantsGene:GLYMA_08G217600	GO:GO:0000932
GO:GO:0003674	GO:GO:0003676	GO:GO:0003824	GO:GO:0004518	GO:GO:0004535	GO:GO:0005488
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0006139	GO:GO:0006412
GO:GO:0008150	GO:GO:0008152	GO:GO:0009056	GO:GO:0009058	GO:GO:0009987	GO:GO:0016787
GO:GO:0017148	GO:GO:0019538	GO:GO:0030015	GO:GO:0043928	GO:GO:0090503	UniProt:I1KVK6
InterPro:IPR036397	ProteinID:KRH44538.1	EnsemblPlants:KRH44539	ProteinID:KRH44539	ProteinID:KRH44539.1	PFAM:PF04857
PANTHER:PTHR10797	PANTHER:PTHR10797:SF34	InterPro:RNaseH-like_sf	InterPro:RNaseH_sf	InterPro:RNase_CAF1	SUPFAM:SSF53098
UniParc:UPI0002338F8D	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr8:-:17664834..17666272

Molecular Weight (calculated)

32033.9 Da

IEP (calculated)

4.436

GRAVY (calculated)

-0.213

Length

281 amino acids

Sequence
(BLAST)

001: MPLILAKSDS IQIREVWNDN LEEEFALIRE IVDNYPYIAM DTEFPGIVLR PVGNFKNSYD YHYQTLKDNV DMLKLIQLGL TFSDEHGNLP MCGGDDEESD
101: TCCCIWQFNF REFNVNEDVF ANDSIELLRQ SGIDFKRNNE NGIDAHRFGE LLMSSGIVLN DNIHWVTFHS GYDFGYLLKL LTCQDLPDTQ VGFFNLINMY
201: FPTVYDIKHL MKFCNSLHGG LNKLAELLEV ERVGISHQAG SDSLLTSCTF RKLKDNFFSG SLEKYAGVLY GLGVENGQGS H

Best Arabidopsis Sequence Match ( AT2G32070.1 )
(BLAST)

001: MSLFLKDDSI QIREVWNDNL ESEMALIREV VDDFPFVAMD TEFPGIVCRP VGTFKTNTEY HYETLKTNVN ILKMIQLGLT FSDEKGNLPT CGTDNKYCIW
101: QFNFREFDLE SDIYATDSIE LLRQSGIDFV KNNEFGIDSK RFAELLMSSG IVLNENVHWV TFHSGYDFGY LLKLLTCQNL PETQTGFFEM ISVYFPRVYD
201: IKHLMKFCNS LHGGLNKLAE LLDVERVGIC HQAGSDSLLT SCTFRKLQEN FFIGSMEKYS GVLYGLGVEN GQIVH

Arabidopsis Description

CAF1-7Probable CCR4-associated factor 1 homolog 7 [Source:UniProtKB/Swiss-Prot;Acc:Q9SKZ2]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.