Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- cytosol 3
- nucleus 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY35049 | Canola | nucleus | 91.97 | 99.64 |
| AT1G15920.2 | Thale cress | nucleus | 58.19 | 60.84 |
| Bra008439.1-P | Field mustard | nucleus | 54.85 | 59.85 |
| Bra005614.1-P | Field mustard | nucleus | 54.85 | 59.42 |
| Bra035152.1-P | Field mustard | cytosol | 54.52 | 59.27 |
| GSMUA_Achr3P04600_001 | Banana | nucleus | 47.49 | 57.96 |
| Solyc03g117030.1.1 | Tomato | nucleus | 52.84 | 57.66 |
| PGSC0003DMT400036620 | Potato | nucleus | 52.84 | 57.66 |
| VIT_09s0070g00060.t01 | Wine grape | nucleus | 52.84 | 57.66 |
| KRH61689 | Soybean | nucleus | 51.84 | 56.78 |
| KRH52356 | Soybean | nucleus | 51.84 | 56.78 |
| KRH47360 | Soybean | nucleus | 52.51 | 56.68 |
| TraesCS5A01G225900.1 | Wheat | cytosol | 52.51 | 56.27 |
| TraesCS5B01G224400.1 | Wheat | cytosol | 52.51 | 56.27 |
| TraesCS5D01G233200.1 | Wheat | cytosol | 52.51 | 56.27 |
| GSMUA_Achr9P13270_001 | Banana | cytosol | 51.51 | 56.0 |
| KRH44539 | Soybean | cytosol | 52.51 | 55.87 |
| PGSC0003DMT400073328 | Potato | nucleus | 50.84 | 55.68 |
| Solyc11g045130.1.1 | Tomato | cytosol | 50.5 | 55.11 |
| PGSC0003DMT400058833 | Potato | cytosol | 50.5 | 55.11 |
| Bra006083.1-P | Field mustard | nucleus | 51.17 | 55.04 |
| VIT_11s0037g00100.t01 | Wine grape | nucleus | 49.5 | 54.81 |
| Os09t0416800-01 | Rice | cytosol | 50.84 | 54.29 |
| VIT_04s0008g05850.t01 | Wine grape | nucleus | 49.5 | 54.21 |
| EER96736 | Sorghum | nucleus | 50.5 | 54.12 |
| Zm00001d020486_P001 | Maize | extracellular | 50.17 | 53.76 |
| Bra009001.1-P | Field mustard | nucleus | 49.83 | 53.21 |
| EES05957 | Sorghum | nucleus | 50.5 | 52.43 |
| GSMUA_Achr4P04220_001 | Banana | nucleus | 47.16 | 52.42 |
| GSMUA_Achr4P04150_001 | Banana | cytosol | 46.82 | 52.04 |
| GSMUA_Achr9P22440_001 | Banana | cytosol | 43.81 | 51.98 |
| Solyc06g068410.2.1 | Tomato | nucleus | 43.81 | 51.98 |
| GSMUA_Achr4P11450_001 | Banana | cytosol | 46.49 | 51.67 |
| TraesCS6D01G341500.1 | Wheat | cytosol | 49.83 | 51.56 |
| TraesCS6A01G358700.1 | Wheat | cytosol | 49.83 | 51.56 |
| HORVU6Hr1G085410.1 | Barley | cytosol | 49.83 | 51.56 |
| TraesCS6B01G391400.1 | Wheat | cytosol | 49.83 | 51.56 |
| Bra020179.1-P | Field mustard | nucleus | 46.49 | 51.48 |
| EES13910 | Sorghum | nucleus | 49.16 | 51.4 |
| Os02t0796300-01 | Rice | cytosol | 50.5 | 51.19 |
| Zm00001d052031_P001 | Maize | cytosol | 48.83 | 50.87 |
| GSMUA_Achr2P05120_001 | Banana | cytosol | 43.14 | 50.19 |
| Bra035002.1-P | Field mustard | nucleus | 45.48 | 50.18 |
| TraesCS7B01G198900.1 | Wheat | nucleus | 48.83 | 49.66 |
| Os08t0440300-03 | Rice | cytosol | 47.83 | 49.65 |
| Zm00001d050433_P001 | Maize | nucleus | 46.49 | 49.64 |
| TraesCS7A01G297000.1 | Wheat | nucleus | 48.49 | 49.32 |
| TraesCS7D01G291400.1 | Wheat | nucleus | 48.49 | 49.32 |
| HORVU7Hr1G067520.3 | Barley | nucleus | 48.49 | 48.33 |
| Bra002400.1-P | Field mustard | nucleus | 45.15 | 48.04 |
| Bra006616.1-P | Field mustard | cytosol | 44.82 | 47.02 |
| KRH28796 | Soybean | nucleus | 15.05 | 45.92 |
| Zm00001d018378_P001 | Maize | nucleus | 11.04 | 41.77 |
| GSMUA_Achr1P10040_001 | Banana | nucleus | 35.45 | 37.99 |
| Zm00001d032158_P002 | Maize | plastid | 49.5 | 37.19 |
| Bra032421.1-P | Field mustard | cytosol, mitochondrion, nucleus | 27.76 | 22.62 |
| Bra023214.1-P | Field mustard | cytosol | 21.4 | 11.59 |
Protein Annotations
| EnsemblPlants:Bra026093.1 | EnsemblPlants:Bra026093.1-P | EnsemblPlantsGene:Bra026093 | Gene3D:3.30.420.10 | GO:GO:0003674 | GO:GO:0003676 |
| GO:GO:0005488 | InterPro:IPR036397 | InterPro:RNaseH-like_sf | InterPro:RNaseH_sf | InterPro:RNase_CAF1 | PANTHER:PTHR10797 |
| PANTHER:PTHR10797:SF0 | PFAM:PF04857 | SUPFAM:SSF53098 | UniParc:UPI000253F12B | UniProt:M4EBD4 | MapMan:35.1 |
Description
AT1G15920 (E=2e-094) | CCR4-NOT transcription complex protein, putative
Coordinates
chrA06:+:6177238..6178137
Molecular Weight (calculated)
34406.4 Da
IEP (calculated)
5.726
GRAVY (calculated)
-0.235
Length
299 amino acids
Sequence
(BLAST)
(BLAST)
001: MIADTDQTRS DLPLRSVLGF SIEMTMVTKQ DDAIEIEIRN VWNENLHHEM SLISQAINYF PYVAMDTEFP GTVCKKVTTD TNPRRDDSTC YESLKTNVNM
101: LNMIQLGLTL SDDQGNLPTF GTNKRQCVWQ FNFREFNLRT DMYAPDSIEL LRRSGIDFDR NSRVGIESKR FADLLMGSGV VLNEEIQWVT FHCGYDFGYL
201: LRLLTGRNLP EKQSEFLYLV KMFFPRVFDI KHMIGFCYDL FGGLSSVAER LEVERVGISH QAGSDSLLTA RVFRRMKETR FAGRSLDMYC GVLYGLGKC
101: LNMIQLGLTL SDDQGNLPTF GTNKRQCVWQ FNFREFNLRT DMYAPDSIEL LRRSGIDFDR NSRVGIESKR FADLLMGSGV VLNEEIQWVT FHCGYDFGYL
201: LRLLTGRNLP EKQSEFLYLV KMFFPRVFDI KHMIGFCYDL FGGLSSVAER LEVERVGISH QAGSDSLLTA RVFRRMKETR FAGRSLDMYC GVLYGLGKC
001: MSQAPNPEEE DDTIEIREVW NHNLEQEMAL IEQSIDDFPY VAMDTEFPGI VCKTVTANPN PNPYSIHYEY NYDTLKANVN MLKLIQLGLT LSDEKGNLPT
101: CGTNKQCIWQ FNFREFNVIS DMFALDSIEL LRKSAIDLEK NNECGVDAKR FAELLMGSGV VLNDKIHWVT FHCGYDFGYL LKLLSGKELP EEISDFFDQM
201: EKFFPVVYDI KYLMGFCTNL YGGLEKIAEL LGVKRVGISH QAGSDSLLTL RTFIKMKEFF FTGSLLKYSG FLFGLDNPRL LTGSKN
101: CGTNKQCIWQ FNFREFNVIS DMFALDSIEL LRKSAIDLEK NNECGVDAKR FAELLMGSGV VLNDKIHWVT FHCGYDFGYL LKLLSGKELP EEISDFFDQM
201: EKFFPVVYDI KYLMGFCTNL YGGLEKIAEL LGVKRVGISH QAGSDSLLTL RTFIKMKEFF FTGSLLKYSG FLFGLDNPRL LTGSKN
Arabidopsis Description
CAF1-2Probable CCR4-associated factor 1 homolog 2 [Source:UniProtKB/Swiss-Prot;Acc:Q9S9P2]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.