Factsheet for Os02t0796300-01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 5
nucleus 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EES05957	Sorghum	nucleus	92.88	95.14
HORVU6Hr1G085410.1	Barley	cytosol	91.53	93.43
TraesCS6A01G358700.1	Wheat	cytosol	91.53	93.43
TraesCS6B01G391400.1	Wheat	cytosol	91.53	93.43
TraesCS6D01G341500.1	Wheat	cytosol	91.53	93.43
Zm00001d052031_P001	Maize	cytosol	89.49	91.99
GSMUA_Achr9P13270_001	Banana	cytosol	72.2	77.45
GSMUA_Achr3P04600_001	Banana	nucleus	63.05	75.92
KRH61689	Soybean	nucleus	67.8	73.26
KRH52356	Soybean	nucleus	67.12	72.53
VIT_09s0070g00060.t01	Wine grape	nucleus	66.78	71.9
KRH47360	Soybean	nucleus	66.78	71.12
Os09t0416800-01	Rice	cytosol	67.46	71.07
PGSC0003DMT400036620	Potato	nucleus	65.76	70.8
CDY12234	Canola	nucleus	66.1	70.65
Solyc03g117030.1.1	Tomato	nucleus	65.42	70.44
Bra005614.1-P	Field mustard	nucleus	65.76	70.29
CDY64914	Canola	nucleus	65.76	70.29
KRH44539	Soybean	cytosol	66.78	70.11
PGSC0003DMT400058833	Potato	cytosol	65.08	70.07
AT2G32070.1	Thale cress	nucleus	64.75	69.45
CDY53227	Canola	nucleus	64.07	68.98
CDY63973	Canola	nucleus	64.07	68.98
Solyc11g045130.1.1	Tomato	cytosol	64.07	68.98
Bra008439.1-P	Field mustard	nucleus	64.07	68.98
VIT_04s0008g05850.t01	Wine grape	nucleus	63.73	68.86
CDX87343	Canola	cytosol	64.07	68.73
Bra035152.1-P	Field mustard	cytosol	64.07	68.73
CDY39943	Canola	cytosol	63.73	68.36
PGSC0003DMT400073328	Potato	nucleus	63.05	68.13
VIT_11s0037g00100.t01	Wine grape	nucleus	62.03	67.78
AT1G80780.3	Thale cress	cytosol	64.75	66.78
Solyc06g068410.2.1	Tomato	nucleus	56.61	66.27
CDX70376	Canola	nucleus	59.32	63.41
Bra006083.1-P	Field mustard	nucleus	59.66	63.31
CDX78405	Canola	nucleus	59.66	63.31
CDX97069	Canola	nucleus	59.66	62.86
AT5G10960.1	Thale cress	nucleus	58.31	62.09
CDX69796	Canola	nucleus	58.31	61.87
Bra009001.1-P	Field mustard	nucleus	58.64	61.79
Os08t0440300-03	Rice	cytosol	58.64	60.07
AT1G15920.2	Thale cress	nucleus	55.93	57.69
KRH28796	Soybean	nucleus	18.64	56.12
CDY35049	Canola	nucleus	50.85	54.35
Bra026093.1-P	Field mustard	nucleus	51.19	50.5
CDY12236	Canola	cytosol, extracellular	50.51	36.16
Os04t0684900-02	Rice	nucleus	39.66	35.56
CDY33367	Canola	cytosol, extracellular	52.54	34.14
Os10t0128300-00	Rice	plastid	31.19	31.62
Os10t0124200-00	Rice	cytosol	30.85	30.85
Os10t0123900-00	Rice	extracellular, mitochondrion, nucleus	28.47	30.55
Os06t0138400-00	Rice	nucleus, peroxisome, plastid	37.29	29.33
Os06t0503900-01	Rice	cytosol, nucleus, plasma membrane	27.8	29.18
Os07t0169800-00	Rice	nucleus	39.32	23.2

Protein Annotations

Gene3D:3.30.420.10	MapMan:35.1	EntrezGene:4331006	EMBL:AK061820	EMBL:AK073025	EMBL:AK119386
ProteinID:BAF10301.1	ProteinID:BAS81365.1	ProteinID:EEE57976.1	GO:GO:0000932	GO:GO:0003674	GO:GO:0003676
GO:GO:0003824	GO:GO:0004518	GO:GO:0004535	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0006139	GO:GO:0006412	GO:GO:0008150	GO:GO:0008152
GO:GO:0009056	GO:GO:0009058	GO:GO:0009987	GO:GO:0016787	GO:GO:0017148	GO:GO:0019538
GO:GO:0030015	GO:GO:0043928	GO:GO:0090503	InterPro:IPR036397	EnsemblPlantsGene:Os02g0796300	EnsemblPlants:Os02t0796300-01
PFAM:PF04857	PANTHER:PTHR10797	PANTHER:PTHR10797:SF33	UniProt:Q0DWT7	InterPro:RNaseH-like_sf	InterPro:RNaseH_sf
InterPro:RNase_CAF1	SUPFAM:SSF53098	UniParc:UPI000043DF4D	RefSeq:XP_015625500.1	SEG:seg	:

Description

CCR4-associated factor 1H, carbon cataboliterepressor 4-associated factor 1H, CCR4-associated factor 1-1Component of the CCR4-NOTcomplex, Deadenylase, Deadenylation (poly(A) tail shortening), Heat stress response (Os02t0796300-01);Similar to CCR4-NOT transcription complex subunit 7 (CCR4-associated factor 1) (CAF1) (BTG1 binding factor 1). (Os02t0796300-02)

Coordinates

chr2:+:33854163..33857047

Molecular Weight (calculated)

32734.9 Da

IEP (calculated)

4.763

GRAVY (calculated)

-0.072

Length

295 amino acids

Sequence
(BLAST)

001: MPMSDPTAAV IPKPGGIGVG GGGGDDEEPV EIREVWADNL EEEFALIRDV VDEFPFVAMD TEFPGIVCRP VGAFRSPADY NYATLKANVD MLHLIQLGLT
101: FSSPRGELPA LGPGRRRCVW QFNFREFDDA RDIFASDSIE LLRRSGIDFR RNSERGVDAR RFAELLMSSG VVLNDSVYWV TFHAGYDFGY LLKILTCSSL
201: PDTQAGFFKL MKIYFPTVYD IKHLMKFCNS LHGGLNKLAE LLDVERVGES HQAGSDSLVT SCAFWKLKDS FFAGSTEKYA GVLYGLNAEN VVSAH

Best Arabidopsis Sequence Match ( AT2G32070.1 )
(BLAST)

001: MSLFLKDDSI QIREVWNDNL ESEMALIREV VDDFPFVAMD TEFPGIVCRP VGTFKTNTEY HYETLKTNVN ILKMIQLGLT FSDEKGNLPT CGTDNKYCIW
101: QFNFREFDLE SDIYATDSIE LLRQSGIDFV KNNEFGIDSK RFAELLMSSG IVLNENVHWV TFHSGYDFGY LLKLLTCQNL PETQTGFFEM ISVYFPRVYD
201: IKHLMKFCNS LHGGLNKLAE LLDVERVGIC HQAGSDSLLT SCTFRKLQEN FFIGSMEKYS GVLYGLGVEN GQIVH

Arabidopsis Description

CAF1-7Probable CCR4-associated factor 1 homolog 7 [Source:UniProtKB/Swiss-Prot;Acc:Q9SKZ2]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.