Factsheet for Os10t0123900-00

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, extracellular, nucleus

Predictor Summary:

nucleus 3
mitochondrion 2
extracellular 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Os04t0654700-02

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G44260.1	Os04t0654700-02	AT1G22920.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d007669_P001	Maize	extracellular, nucleus, plastid	20.36	43.08
Zm00001d007664_P001	Maize	extracellular, nucleus, plastid	20.36	43.08
Zm00001d007662_P001	Maize	extracellular, nucleus, plastid	20.36	43.08
Zm00001d007666_P001	Maize	extracellular, nucleus, plastid	21.09	42.34
EES10179	Sorghum	plasma membrane, plastid	41.82	40.93
Zm00001d007654_P001	Maize	nucleus, plasma membrane, plastid	42.55	40.62
OQU83919	Sorghum	mitochondrion	35.27	39.75
Zm00001d048757_P001	Maize	nucleus, plasma membrane, plastid	42.18	39.73
Zm00001d048746_P001	Maize	nucleus, plasma membrane, plastid	41.82	39.38
Zm00001d048748_P001	Maize	nucleus, plasma membrane, plastid	41.82	39.25
Zm00001d002885_P001	Maize	plastid	45.45	39.19
Zm00001d048752_P001	Maize	nucleus, plasma membrane, plastid	41.82	39.12
Zm00001d048754_P001	Maize	nucleus, plasma membrane, plastid	41.82	39.12
OQU83918	Sorghum	cytosol, extracellular, nucleus	24.36	35.64
CDY09125	Canola	nucleus	34.91	35.56
CDY35673	Canola	nucleus	34.91	35.56
Bra020179.1-P	Field mustard	nucleus	34.55	35.19
CDY47299	Canola	nucleus	34.55	34.93
VIT_06s0080g01090.t01	Wine grape	nucleus	35.27	34.89
Bra002400.1-P	Field mustard	nucleus	35.64	34.88
Bra035002.1-P	Field mustard	nucleus	34.18	34.69
CDY08688	Canola	cytosol	34.91	34.41
KXG22837	Sorghum	mitochondrion	43.27	34.39
CDX92371	Canola	nucleus	35.27	34.28
KRH25294	Soybean	nucleus	34.55	34.17
Os10t0128300-00	Rice	plastid	36.0	34.02
CDX98586	Canola	nucleus	34.91	33.92
AT5G22250.1	Thale cress	cytosol	34.18	33.81
KRH30376	Soybean	nucleus	34.55	33.45
Bra006616.1-P	Field mustard	cytosol	34.55	33.33
CDX88806	Canola	cytosol	34.55	33.33
AT3G44260.1	Thale cress	cytosol	33.82	33.21
Os10t0124200-00	Rice	cytosol	34.18	31.86
PGSC0003DMT400042215	Potato	plastid	31.64	30.53
KRH26669	Soybean	endoplasmic reticulum, golgi	33.82	30.1
KRH22647	Soybean	endoplasmic reticulum, vacuole	33.82	29.81
Os09t0416800-01	Rice	cytosol	30.18	29.64
GSMUA_AchrUn_...	Banana	mitochondrion	27.64	29.57
Solyc01g007840.2.1	Tomato	plastid	30.55	29.47
GSMUA_Achr8P18010_001	Banana	mitochondrion	27.64	29.34
Os08t0440300-03	Rice	cytosol	30.55	29.17
Os02t0796300-01	Rice	cytosol	30.55	28.47
CDX70991	Canola	cytosol, nucleus, plastid	13.09	28.35
Os06t0138400-00	Rice	nucleus, peroxisome, plastid	36.36	26.67
Os04t0684900-02	Rice	nucleus	28.73	24.01
Os06t0503900-01	Rice	cytosol, nucleus, plasma membrane	22.18	21.71
Os07t0169800-00	Rice	nucleus	34.55	19.0

Protein Annotations

Gene3D:3.30.420.10	MapMan:35.1	UniProt:A0A0P0XR79	ProteinID:BAT09705.1	GO:GO:0000932	GO:GO:0003674
GO:GO:0003676	GO:GO:0003824	GO:GO:0004518	GO:GO:0004535	GO:GO:0005488	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0006139	GO:GO:0006412	GO:GO:0008150
GO:GO:0008152	GO:GO:0009056	GO:GO:0009058	GO:GO:0009987	GO:GO:0016787	GO:GO:0017148
GO:GO:0019538	GO:GO:0030015	GO:GO:0043928	GO:GO:0090503	InterPro:IPR036397	EnsemblPlantsGene:Os10g0123900
EnsemblPlants:Os10t0123900-00	PFAM:PF04857	PANTHER:PTHR10797	PANTHER:PTHR10797:SF9	InterPro:RNaseH-like_sf	InterPro:RNaseH_sf
InterPro:RNase_CAF1	SUPFAM:SSF53098	UniParc:UPI00005E1B46	SEG:seg	:	:

Description

CCR4-associated factor 1-14, carbon catabolite repressor 4-associated factor 1-14, CCR4-associated factor 1F, carbon catabolite repressor 4-associated factor 1FSimilar to CAF1 family ribonuclease containing protein. (Os10t0123900-00)

Coordinates

chr10:-:1525512..1526367

Molecular Weight (calculated)

29902.9 Da

IEP (calculated)

5.547

GRAVY (calculated)

-0.077

Length

275 amino acids

Sequence
(BLAST)

001: MHAAAAPAPP LWLRTMTAAN LDSEMGLIGE MMVQYPYVTI DVEFAGVVHH PPYTGSRPTP DEIYAALKSN VDEVPAVQIG ITLSDAEGNL PTRSSSSPEQ
101: EIAWEVVFSD FDAGRDPHVV DSVEFLKNQG IDFDLARQIG VTSTAFGEKL LAILPPPSRR GELTWSAFGG AYDMGYLLKM LTGGQPLPET RQQFMQLVKS
201: RLGGGRIFDS KYLVEHDRQD LRNAGLRHTA DVLGVRQQEG VKMLAGHKSV VAAAIFATIR SQGVHLLHGV IDGIL

Best Arabidopsis Sequence Match ( AT5G22250.1 )
(BLAST)

001: MIKSEADLSD VIVIRDVWAY NLESEFDLIR GIVEDYPFIS MDTEFPGVIY KADLDVLRRG NPNYLYNLLK SNVDALSLIQ VGLTLSDADG NLPDLGGQKN
101: RRYIWEFNFR DFDVERDPHA PDSIELLRRH GIDFERNRRE GVESERFAEL MMSSGLICNE SVSWVTFHSA YDFGYLVKIL TRRQLPVALR EFLGLLRAFF
201: GDRVYDVKHI MRFCEQRLYG GLDRVARSLE VNRAVGKCHQ AGSDSLLTWQ AFQRMRDLYF VEDGAEKHAG VLYGLEVF

Arabidopsis Description

CAF1-11Probable CCR4-associated factor 1 homolog 11 [Source:UniProtKB/Swiss-Prot;Acc:Q9FMS6]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.