Subcellular Localization
min:
: max
Winner_takes_all: mitochondrion
Predictor Summary:
Predictor Summary:
- plastid 3
- mitochondrion 4
- nucleus 2
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- plasma membrane 1
- golgi 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| GSMUA_Achr10P... |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT3G44260.1 | GSMUA_Achr10P... | AT1G22920.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| GSMUA_Achr8P18010_001 | Banana | mitochondrion | 96.5 | 95.75 |
| GSMUA_Achr6P19460_001 | Banana | cytosol | 33.46 | 49.71 |
| GSMUA_Achr9P29700_001 | Banana | cytosol | 38.52 | 46.48 |
| GSMUA_Achr6P19450_001 | Banana | cytosol | 43.19 | 45.49 |
| CDX70991 | Canola | cytosol, nucleus, plastid | 21.79 | 44.09 |
| Bra020179.1-P | Field mustard | nucleus | 43.19 | 41.11 |
| CDY09125 | Canola | nucleus | 43.19 | 41.11 |
| CDY35673 | Canola | nucleus | 42.41 | 40.37 |
| Bra035002.1-P | Field mustard | nucleus | 42.41 | 40.22 |
| CDY47299 | Canola | nucleus | 42.02 | 39.71 |
| GSMUA_Achr2P05120_001 | Banana | cytosol | 39.69 | 39.69 |
| GSMUA_Achr3P04600_001 | Banana | nucleus | 37.74 | 39.59 |
| KRH25294 | Soybean | nucleus | 42.8 | 39.57 |
| VIT_06s0080g01090.t01 | Wine grape | nucleus | 42.41 | 39.21 |
| PGSC0003DMT400042215 | Potato | plastid | 43.19 | 38.95 |
| GSMUA_Achr9P13270_001 | Banana | cytosol | 41.25 | 38.55 |
| AT5G22250.1 | Thale cress | cytosol | 41.63 | 38.49 |
| CDY08688 | Canola | cytosol | 41.63 | 38.35 |
| GSMUA_Achr4P04150_001 | Banana | cytosol | 40.08 | 38.29 |
| Solyc01g007840.2.1 | Tomato | plastid | 42.41 | 38.25 |
| GSMUA_Achr4P04220_001 | Banana | nucleus | 39.69 | 37.92 |
| GSMUA_Achr4P11450_001 | Banana | cytosol | 39.69 | 37.92 |
| AT3G44260.1 | Thale cress | cytosol | 41.25 | 37.86 |
| CDX98586 | Canola | nucleus | 41.63 | 37.81 |
| CDX92371 | Canola | nucleus | 41.63 | 37.81 |
| KRH30376 | Soybean | nucleus | 41.63 | 37.68 |
| Bra002400.1-P | Field mustard | nucleus | 40.86 | 37.37 |
| GSMUA_Achr9P22440_001 | Banana | cytosol | 36.19 | 36.9 |
| Bra006616.1-P | Field mustard | cytosol | 40.47 | 36.49 |
| CDX88806 | Canola | cytosol | 40.47 | 36.49 |
| TraesCSU01G062600.1 | Wheat | cytosol | 36.19 | 36.19 |
| KRH26669 | Soybean | endoplasmic reticulum, golgi | 43.19 | 35.92 |
| TraesCS7D01G075800.1 | Wheat | nucleus | 35.8 | 35.66 |
| KRH22647 | Soybean | endoplasmic reticulum, vacuole | 43.19 | 35.58 |
| EER87806 | Sorghum | cytosol, nucleus, plasma membrane | 39.3 | 31.96 |
| EES10179 | Sorghum | plasma membrane, plastid | 34.63 | 31.67 |
| Zm00001d048752_P001 | Maize | nucleus, plasma membrane, plastid | 36.19 | 31.63 |
| Zm00001d048754_P001 | Maize | nucleus, plasma membrane, plastid | 36.19 | 31.63 |
| GSMUA_Achr1P10040_001 | Banana | nucleus | 34.24 | 31.54 |
| Zm00001d048746_P001 | Maize | nucleus, plasma membrane, plastid | 35.8 | 31.51 |
| Zm00001d048748_P001 | Maize | nucleus, plasma membrane, plastid | 35.8 | 31.4 |
| Zm00001d048757_P001 | Maize | nucleus, plasma membrane, plastid | 35.41 | 31.16 |
| Zm00001d007654_P001 | Maize | nucleus, plasma membrane, plastid | 33.46 | 29.86 |
| Os10t0128300-00 | Rice | plastid | 33.07 | 29.21 |
| OQU83919 | Sorghum | mitochondrion | 27.63 | 29.1 |
| Os06t0138400-00 | Rice | nucleus, peroxisome, plastid | 42.02 | 28.8 |
| GSMUA_Achr4P30930_001 | Banana | cytosol | 21.4 | 28.21 |
| EES09326 | Sorghum | mitochondrion, nucleus | 32.68 | 28.19 |
| Zm00001d002885_P001 | Maize | plastid | 34.63 | 27.9 |
| Os10t0123900-00 | Rice | extracellular, mitochondrion, nucleus | 29.57 | 27.64 |
| Os10t0124200-00 | Rice | cytosol | 30.74 | 26.78 |
| TraesCS6D01G318000.1 | Wheat | plastid | 29.18 | 26.5 |
| Zm00001d007669_P001 | Maize | extracellular, nucleus, plastid | 13.23 | 26.15 |
| Zm00001d007664_P001 | Maize | extracellular, nucleus, plastid | 13.23 | 26.15 |
| Zm00001d007662_P001 | Maize | extracellular, nucleus, plastid | 13.23 | 26.15 |
| Zm00001d007666_P001 | Maize | extracellular, nucleus, plastid | 13.62 | 25.55 |
| OQU83918 | Sorghum | cytosol, extracellular, nucleus | 18.68 | 25.53 |
| TraesCS3D01G406100.1 | Wheat | nucleus, plasma membrane, plastid | 28.02 | 25.44 |
| TraesCS7B01G235700.1 | Wheat | cytosol | 25.29 | 24.71 |
| TraesCS3D01G384800.1 | Wheat | cytosol, mitochondrion, nucleus, plasma membrane | 16.73 | 24.71 |
| KXG20050 | Sorghum | plastid | 25.68 | 24.54 |
| TraesCS4B01G071000.1 | Wheat | plastid | 28.02 | 24.41 |
| TraesCS7D01G331400.1 | Wheat | cytosol | 24.9 | 24.33 |
| TraesCS4D01G069900.1 | Wheat | plastid | 28.02 | 23.84 |
| TraesCS3B01G424000.1 | Wheat | cytosol | 19.07 | 23.79 |
| TraesCS7A01G347500.1 | Wheat | cytosol | 24.51 | 23.77 |
| KXG22837 | Sorghum | mitochondrion | 31.91 | 23.7 |
| TraesCS4A01G243900.1 | Wheat | plastid | 27.63 | 23.59 |
| TraesCS4B01G071200.1 | Wheat | plastid | 27.63 | 23.59 |
| TraesCS7A01G347600.1 | Wheat | cytosol | 24.12 | 23.48 |
| Zm00001d031508_P001 | Maize | cytosol | 35.8 | 23.35 |
| TraesCS4B01G071100.1 | Wheat | plastid | 27.24 | 23.18 |
| TraesCS7A01G082100.1 | Wheat | nucleus | 39.3 | 23.11 |
| TraesCS3B01G444600.1 | Wheat | mitochondrion | 26.85 | 23.08 |
| TraesCS3A01G411800.1 | Wheat | mitochondrion, plastid | 26.85 | 23.0 |
| GSMUA_Achr4P30910_001 | Banana | nucleus | 29.57 | 22.49 |
| TraesCS4A01G243800.1 | Wheat | plastid | 25.68 | 22.15 |
| TraesCS4A01G243700.1 | Wheat | plastid | 25.68 | 22.15 |
| Os07t0169800-00 | Rice | nucleus | 42.8 | 22.0 |
| Os06t0503900-01 | Rice | cytosol, nucleus, plasma membrane | 22.96 | 21.0 |
| TraesCS3B01G445400.1 | Wheat | plastid | 26.85 | 20.85 |
| Zm00001d007893_P001 | Maize | nucleus | 40.08 | 20.64 |
| KXG38897 | Sorghum | plastid | 26.46 | 19.94 |
| Zm00001d029981_P001 | Maize | plastid | 27.24 | 18.87 |
| OQU76454 | Sorghum | plastid | 13.62 | 17.24 |
| EER98038 | Sorghum | plastid | 38.52 | 17.19 |
| OQU76452 | Sorghum | plastid | 10.51 | 16.56 |
| OQU76453 | Sorghum | plastid | 13.23 | 11.3 |
Protein Annotations
| EnsemblPlants:GSMUA_AchrUn_randomP28400_001 | EnsemblPlants:GSMUA_AchrUn_randomT28400_001 | EnsemblPlantsGene:GSMUA_AchrUn_randomG28400_001 | Gene3D:3.30.420.10 | GO:GO:0003674 | GO:GO:0003676 |
| GO:GO:0005488 | InterPro:IPR036397 | InterPro:RNaseH-like_sf | InterPro:RNaseH_sf | InterPro:RNase_CAF1 | PANTHER:PTHR10797 |
| PANTHER:PTHR10797:SF3 | PFAM:PF04857 | SEG:seg | SUPFAM:SSF53098 | UniParc:UPI00029617E6 | UniProt:M0UD48 |
| MapMan:35.1 | : | : | : | : | : |
Description
Putative Probable CCR4-associated factor 1 homolog 11 [Source:GMGC_GENE;Acc:GSMUA_AchrUn_randomG28400_001]
Coordinates
chrchrUn_random:+:137859895..137861750
Molecular Weight (calculated)
28721.8 Da
IEP (calculated)
8.834
GRAVY (calculated)
-0.038
Length
257 amino acids
Sequence
(BLAST)
(BLAST)
001: MSSQRGGGGR QHLVVRSVWA WNLEYEFSII ASLVDRFSYV AFDTEFPGFL YRTRRPHRLL PPRLRYAFLK ANVDKMELVQ LGLTLFDAFG DLPDIGTGGR
101: VGGIDFDRLP LYGIDSGQFA AHLYRSGLVA HCRFCRPHST RWIAFHSCYD FAYLIKVLGF GGPLPDTLEE FLGLVNLLFG ETVDLKHMMR GCKGLSGGLE
201: KAASTLGVPR QAGKSHQAGS DSLVTCQVYL KMKQRFFDDQ DAKVACHRGI IYGLQAC
101: VGGIDFDRLP LYGIDSGQFA AHLYRSGLVA HCRFCRPHST RWIAFHSCYD FAYLIKVLGF GGPLPDTLEE FLGLVNLLFG ETVDLKHMMR GCKGLSGGLE
201: KAASTLGVPR QAGKSHQAGS DSLVTCQVYL KMKQRFFDDQ DAKVACHRGI IYGLQAC
001: MAIIKPNRDL KPDGVTVVTR EVWAENLESE FELISEIIDD YPFISMDTEF PGVIFKSDLR FTNPDDLYTL LKANVDALSL IQVGLTLSDV NGNLPDLGDD
101: LHRGFIWEFN FRDFDVARDA HAPDSIELLR RQGIDFERNC RDGVESERFA ELMMSSGLVC NEEVSWVTFH SAYDFGYLMK ILTRRELPGA LGEFKRVMRV
201: LFGERVYDVK HMMKFCERRL FGGLDRVART LEVNRAVGKC HQAGSDSLLT WHAFQRMRDL YFVQDGPEKH AGVLYGLEVF
101: LHRGFIWEFN FRDFDVARDA HAPDSIELLR RQGIDFERNC RDGVESERFA ELMMSSGLVC NEEVSWVTFH SAYDFGYLMK ILTRRELPGA LGEFKRVMRV
201: LFGERVYDVK HMMKFCERRL FGGLDRVART LEVNRAVGKC HQAGSDSLLT WHAFQRMRDL YFVQDGPEKH AGVLYGLEVF
Arabidopsis Description
CAF1-9Probable CCR4-associated factor 1 homolog 9 [Source:UniProtKB/Swiss-Prot;Acc:Q9LXM2]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.