Factsheet for TraesCSU01G062600.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
mitochondrion 1
plastid 1
cytosol 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus, plastid
BaCelLo:	nucleus
MultiLoc:	nucleus
Predotar:	plastid
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS2A01G504600.1
TraesCS2D01G505300.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G44260.1	TraesCS2A01G504600.1	AT1G22920.1	21798944
AT3G44260.1	TraesCS2D01G505300.1	AT1G22920.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS7D01G075800.1	Wheat	nucleus	90.27	89.92
TraesCS7A01G082100.1	Wheat	nucleus	85.6	50.34
EER87806	Sorghum	cytosol, nucleus, plasma membrane	52.14	42.41
CDX70991	Canola	cytosol, nucleus, plastid	20.62	41.73
Os06t0138400-00	Rice	nucleus, peroxisome, plastid	57.2	39.2
GSMUA_Achr8P18010_001	Banana	mitochondrion	37.35	37.07
Bra020179.1-P	Field mustard	nucleus	38.91	37.04
CDY35673	Canola	nucleus	38.91	37.04
VIT_06s0080g01090.t01	Wine grape	nucleus	39.69	36.69
CDY09125	Canola	nucleus	38.52	36.67
Bra035002.1-P	Field mustard	nucleus	38.52	36.53
CDY47299	Canola	nucleus	38.52	36.4
GSMUA_AchrUn_...	Banana	mitochondrion	36.19	36.19
KRH25294	Soybean	nucleus	38.91	35.97
AT5G22250.1	Thale cress	cytosol	38.91	35.97
AT3G44260.1	Thale cress	cytosol	38.91	35.71
CDY08688	Canola	cytosol	38.52	35.48
KRH30376	Soybean	nucleus	38.52	34.86
Bra002400.1-P	Field mustard	nucleus	37.74	34.52
CDX98586	Canola	nucleus	37.74	34.28
CDX92371	Canola	nucleus	37.74	34.28
CDX88806	Canola	cytosol	37.74	34.04
Bra006616.1-P	Field mustard	cytosol	37.35	33.68
Solyc01g007840.2.1	Tomato	plastid	36.97	33.33
PGSC0003DMT400042215	Potato	plastid	36.19	32.63
KRH26669	Soybean	endoplasmic reticulum, golgi	36.58	30.42
KRH22647	Soybean	endoplasmic reticulum, vacuole	35.8	29.49

Protein Annotations

EnsemblPlants:TraesCSU01G062600.1	EnsemblPlantsGene:TraesCSU01G062600	Gene3D:3.30.420.10	GO:GO:0003674	GO:GO:0003676	GO:GO:0005488
InterPro:IPR036397	InterPro:RNaseH-like_sf	InterPro:RNaseH_sf	InterPro:RNase_CAF1	ncoils:Coil	PANTHER:PTHR10797
PANTHER:PTHR10797:SF12	PFAM:PF04857	SUPFAM:SSF53098	MapMan:35.1	:	:

Description

No Description!

Coordinates

chrUn:+:49008204..49008977

Molecular Weight (calculated)

28618.3 Da

IEP (calculated)

9.558

GRAVY (calculated)

-0.398

Length

257 amino acids

Sequence
(BLAST)

001: MAAITALLPT HPVVTIDTEF PGTVYDSATP RKLRSAKEAY ALVRRNVDRL KHLLQLGLTL SGPGGSHPVV WQFNFRGFDE RRDPHAPESI AMLKAHGMDF
101: ARLREDGIDP GDFTDEFMRS GLNHRRPRRG RSAPEPLTWV AFSGSYDFGY LARMLYQRGK KGLPQKLEDF GRRVENLFGP WVLDAKYIAK TCRLDGGLET
201: VANDLGVQRR AGVAHNAGSD SLLTADVMLS IVLRLEAPPN PDYEVREKHA GKIDGLV

Best Arabidopsis Sequence Match ( AT3G44260.1 )
(BLAST)

001: MAIIKPNRDL KPDGVTVVTR EVWAENLESE FELISEIIDD YPFISMDTEF PGVIFKSDLR FTNPDDLYTL LKANVDALSL IQVGLTLSDV NGNLPDLGDD
101: LHRGFIWEFN FRDFDVARDA HAPDSIELLR RQGIDFERNC RDGVESERFA ELMMSSGLVC NEEVSWVTFH SAYDFGYLMK ILTRRELPGA LGEFKRVMRV
201: LFGERVYDVK HMMKFCERRL FGGLDRVART LEVNRAVGKC HQAGSDSLLT WHAFQRMRDL YFVQDGPEKH AGVLYGLEVF

Arabidopsis Description

CAF1-9Probable CCR4-associated factor 1 homolog 9 [Source:UniProtKB/Swiss-Prot;Acc:Q9LXM2]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.