Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- cytosol 3
- nucleus 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT3G44260.1 | CDY04768 | AT1G22920.1 | 21798944 |
| AT3G44260.1 | CDY21400 | AT1G22920.1 | 21798944 |
| AT3G44260.1 | CDY25761 | AT1G22920.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY47299 | Canola | nucleus | 93.91 | 96.32 |
| AT3G44260.1 | Thale cress | cytosol | 84.95 | 84.64 |
| CDX70991 | Canola | cytosol, nucleus, plastid | 37.63 | 82.68 |
| CDY35673 | Canola | nucleus | 78.85 | 81.48 |
| CDY09125 | Canola | nucleus | 78.49 | 81.11 |
| CDX92371 | Canola | nucleus | 79.93 | 78.8 |
| CDX98586 | Canola | nucleus | 79.57 | 78.45 |
| CDX88806 | Canola | cytosol | 76.7 | 75.09 |
| VIT_06s0080g01090.t01 | Wine grape | nucleus | 73.12 | 73.38 |
| KRH25294 | Soybean | nucleus | 70.61 | 70.86 |
| KRH30376 | Soybean | nucleus | 69.53 | 68.31 |
| KRH26669 | Soybean | endoplasmic reticulum, golgi | 69.53 | 62.78 |
| GSMUA_Achr9P29700_001 | Banana | cytosol | 46.95 | 61.5 |
| KRH22647 | Soybean | endoplasmic reticulum, vacuole | 68.46 | 61.22 |
| Solyc01g007840.2.1 | Tomato | plastid | 59.5 | 58.25 |
| GSMUA_Achr6P19450_001 | Banana | cytosol | 50.9 | 58.2 |
| PGSC0003DMT400042215 | Potato | plastid | 59.14 | 57.89 |
| GSMUA_Achr6P19460_001 | Banana | cytosol | 35.84 | 57.8 |
| CDY64914 | Canola | nucleus | 52.33 | 52.9 |
| CDY12234 | Canola | nucleus | 51.97 | 52.54 |
| CDX69796 | Canola | nucleus | 50.9 | 51.08 |
| CDX70376 | Canola | nucleus | 50.18 | 50.72 |
| CDY35049 | Canola | nucleus | 50.18 | 50.72 |
| CDX78405 | Canola | nucleus | 50.18 | 50.36 |
| CDX97069 | Canola | nucleus | 50.54 | 50.36 |
| CDY53227 | Canola | nucleus | 49.1 | 50.0 |
| CDY63973 | Canola | nucleus | 49.1 | 50.0 |
| CDX87343 | Canola | cytosol | 48.75 | 49.45 |
| CDY39943 | Canola | cytosol | 48.75 | 49.45 |
| Zm00001d026657_P001 | Maize | cytosol | 48.03 | 44.82 |
| Zm00001d001774_P001 | Maize | nucleus | 46.59 | 43.77 |
| GSMUA_Achr8P18010_001 | Banana | mitochondrion | 39.43 | 42.47 |
| Os04t0684900-02 | Rice | nucleus | 49.46 | 41.95 |
| GSMUA_AchrUn_... | Banana | mitochondrion | 38.35 | 41.63 |
| TraesCS2D01G597200.1 | Wheat | nucleus | 46.24 | 39.45 |
| EES11684 | Sorghum | nucleus | 47.31 | 39.4 |
| TraesCS2A01G583000.1 | Wheat | nucleus | 45.52 | 39.2 |
| HORVU2Hr1G123480.1 | Barley | nucleus | 45.52 | 39.08 |
| TraesCS2B01G603600.1 | Wheat | cytosol | 45.52 | 39.08 |
| TraesCSU01G062600.1 | Wheat | cytosol | 35.48 | 38.52 |
| TraesCS7D01G075800.1 | Wheat | nucleus | 34.77 | 37.6 |
| Zm00001d007662_P001 | Maize | extracellular, nucleus, plastid | 16.85 | 36.15 |
| Zm00001d007664_P001 | Maize | extracellular, nucleus, plastid | 16.85 | 36.15 |
| Zm00001d007669_P001 | Maize | extracellular, nucleus, plastid | 16.85 | 36.15 |
| Zm00001d007666_P001 | Maize | extracellular, nucleus, plastid | 17.56 | 35.77 |
| Os10t0123900-00 | Rice | extracellular, mitochondrion, nucleus | 34.41 | 34.91 |
| TraesCS7A01G347500.1 | Wheat | cytosol | 31.18 | 32.83 |
| TraesCS3D01G384800.1 | Wheat | cytosol, mitochondrion, nucleus, plasma membrane | 20.43 | 32.76 |
| EES10179 | Sorghum | plasma membrane, plastid | 32.97 | 32.74 |
| EER87806 | Sorghum | cytosol, nucleus, plasma membrane | 36.92 | 32.59 |
| TraesCS7A01G347600.1 | Wheat | cytosol | 30.82 | 32.58 |
| TraesCS3B01G424000.1 | Wheat | cytosol | 24.01 | 32.52 |
| TraesCS7D01G331400.1 | Wheat | cytosol | 30.11 | 31.94 |
| TraesCS7B01G235700.1 | Wheat | cytosol | 29.75 | 31.56 |
| Zm00001d048757_P001 | Maize | nucleus, plasma membrane, plastid | 32.62 | 31.16 |
| Zm00001d048752_P001 | Maize | nucleus, plasma membrane, plastid | 32.62 | 30.95 |
| Zm00001d048754_P001 | Maize | nucleus, plasma membrane, plastid | 32.62 | 30.95 |
| Os10t0128300-00 | Rice | plastid | 32.26 | 30.93 |
| Zm00001d048746_P001 | Maize | nucleus, plasma membrane, plastid | 32.26 | 30.82 |
| Zm00001d007654_P001 | Maize | nucleus, plasma membrane, plastid | 31.54 | 30.56 |
| Zm00001d048748_P001 | Maize | nucleus, plasma membrane, plastid | 31.9 | 30.38 |
| CDY33367 | Canola | cytosol, extracellular | 49.1 | 30.18 |
| Os10t0124200-00 | Rice | cytosol | 31.54 | 29.83 |
| Os06t0503900-01 | Rice | cytosol, nucleus, plasma membrane | 29.75 | 29.54 |
| KXG20050 | Sorghum | plastid | 27.96 | 29.0 |
| CDY12236 | Canola | cytosol, extracellular | 42.65 | 28.88 |
| Os06t0138400-00 | Rice | nucleus, peroxisome, plastid | 38.35 | 28.53 |
| TraesCS3D01G406100.1 | Wheat | nucleus, plasma membrane, plastid | 28.67 | 28.27 |
| TraesCS3A01G411800.1 | Wheat | mitochondrion, plastid | 29.39 | 27.33 |
| Zm00001d002885_P001 | Maize | plastid | 31.18 | 27.27 |
| TraesCS6D01G318000.1 | Wheat | plastid | 27.6 | 27.21 |
| OQU83919 | Sorghum | mitochondrion | 23.66 | 27.05 |
| EES09326 | Sorghum | mitochondrion, nucleus | 27.96 | 26.17 |
| TraesCS4A01G243700.1 | Wheat | plastid | 27.96 | 26.17 |
| CDY26919 | Canola | cytosol | 30.11 | 26.09 |
| CDX73277 | Canola | cytosol | 30.11 | 26.01 |
| TraesCS4A01G243900.1 | Wheat | plastid | 27.96 | 25.91 |
| TraesCS4B01G071200.1 | Wheat | plastid | 27.6 | 25.58 |
| OQU83918 | Sorghum | cytosol, extracellular, nucleus | 17.2 | 25.53 |
| TraesCS4A01G243800.1 | Wheat | plastid | 27.24 | 25.5 |
| TraesCS4B01G071000.1 | Wheat | plastid | 26.88 | 25.42 |
| TraesCS3B01G444600.1 | Wheat | mitochondrion | 27.24 | 25.42 |
| TraesCS7A01G082100.1 | Wheat | nucleus | 39.43 | 25.17 |
| TraesCS4B01G071100.1 | Wheat | plastid | 27.24 | 25.17 |
| TraesCS4D01G069900.1 | Wheat | plastid | 27.24 | 25.17 |
| OQU76452 | Sorghum | plastid | 14.7 | 25.15 |
| CDY06214 | Canola | cytosol, mitochondrion, nucleus | 32.26 | 24.52 |
| CDY09974 | Canola | cytosol, mitochondrion, nucleus | 32.26 | 24.52 |
| CDY09972 | Canola | cytosol, mitochondrion, nucleus | 32.62 | 24.14 |
| KXG22837 | Sorghum | mitochondrion | 29.39 | 23.7 |
| TraesCS3B01G445400.1 | Wheat | plastid | 27.6 | 23.26 |
| Os07t0169800-00 | Rice | nucleus | 41.58 | 23.2 |
| KXG38897 | Sorghum | plastid | 27.6 | 22.58 |
| Zm00001d029981_P001 | Maize | plastid | 29.03 | 21.83 |
| OQU76454 | Sorghum | plastid | 15.77 | 21.67 |
| Zm00001d031508_P001 | Maize | cytosol | 29.75 | 21.07 |
| CDY12276 | Canola | cytosol | 25.81 | 20.34 |
| CDY22569 | Canola | cytosol | 31.54 | 19.47 |
| Zm00001d007893_P001 | Maize | nucleus | 34.77 | 19.44 |
| EER98038 | Sorghum | plastid | 38.35 | 18.58 |
| OQU76453 | Sorghum | plastid | 16.49 | 15.28 |
| CDX83963 | Canola | cytosol | 0.0 | 0.0 |
| CDX96828 | Canola | cytosol | 0.0 | 0.0 |
| CDY70980 | Canola | cytosol | 0.0 | 0.0 |
Protein Annotations
| EnsemblPlants:CDY08688 | EnsemblPlantsGene:GSBRNA2T00000566001 | Gene3D:3.30.420.10 | GO:A0A078FA63 | GO:GO:0003674 | GO:GO:0003676 |
| GO:GO:0005488 | InterPro:IPR036397 | InterPro:RNaseH-like_sf | InterPro:RNaseH_sf | InterPro:RNase_CAF1 | PANTHER:PTHR10797 |
| PANTHER:PTHR10797:SF3 | PFAM:PF04857 | ProteinID:CDY08688 | ProteinID:CDY08688.1 | SUPFAM:SSF53098 | UniParc:UPI0004EDD2F1 |
| UniProt:A0A078FA63 | MapMan:16.8.2.1.2.2 | : | : | : | : |
Description
BnaC03g54940DBnaC03g54940D protein [Source:UniProtKB/TrEMBL;Acc:A0A078FA63]
Coordinates
chrLK031988:-:256211..257050
Molecular Weight (calculated)
31955.2 Da
IEP (calculated)
4.887
GRAVY (calculated)
-0.237
Length
279 amino acids
Sequence
(BLAST)
(BLAST)
001: MTIINLDTYP RNKPGGAIAI REVWAENLES EFELISGIID DYPFVSMDTE FPGVIFKSDL RRGNPADLYS LLKSNVDALS LIQVGLTLSD ADGNLPDLGA
101: GRRFIWEFNF KDFDVARDAH APDSIELLRR QGIDFERNCR DGVDSERFAE LMMSSGLVCN EEVSWVTFHS AYDFGYLMKI LTRRELPCAL GEFQRMMKAL
201: FGERVYDMKH MMRFCERKLY GGLDRVARTL EVSREVGKCH QAGSDSLLTW HAFQRMRDLY FLQDGPEKHA GVLYGLEVF
101: GRRFIWEFNF KDFDVARDAH APDSIELLRR QGIDFERNCR DGVDSERFAE LMMSSGLVCN EEVSWVTFHS AYDFGYLMKI LTRRELPCAL GEFQRMMKAL
201: FGERVYDMKH MMRFCERKLY GGLDRVARTL EVSREVGKCH QAGSDSLLTW HAFQRMRDLY FLQDGPEKHA GVLYGLEVF
001: MAIIKPNRDL KPDGVTVVTR EVWAENLESE FELISEIIDD YPFISMDTEF PGVIFKSDLR FTNPDDLYTL LKANVDALSL IQVGLTLSDV NGNLPDLGDD
101: LHRGFIWEFN FRDFDVARDA HAPDSIELLR RQGIDFERNC RDGVESERFA ELMMSSGLVC NEEVSWVTFH SAYDFGYLMK ILTRRELPGA LGEFKRVMRV
201: LFGERVYDVK HMMKFCERRL FGGLDRVART LEVNRAVGKC HQAGSDSLLT WHAFQRMRDL YFVQDGPEKH AGVLYGLEVF
101: LHRGFIWEFN FRDFDVARDA HAPDSIELLR RQGIDFERNC RDGVESERFA ELMMSSGLVC NEEVSWVTFH SAYDFGYLMK ILTRRELPGA LGEFKRVMRV
201: LFGERVYDVK HMMKFCERRL FGGLDRVART LEVNRAVGKC HQAGSDSLLT WHAFQRMRDL YFVQDGPEKH AGVLYGLEVF
Arabidopsis Description
CAF1-9Probable CCR4-associated factor 1 homolog 9 [Source:UniProtKB/Swiss-Prot;Acc:Q9LXM2]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.