Subcellular Localization
min:
: max
Winner_takes_all: mitochondrion, nucleus
Predictor Summary:
Predictor Summary:
- plastid 1
- mitochondrion 4
- nucleus 2
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| KXG27287 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT3G44260.1 | KXG27287 | AT1G22920.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Os10t0124200-00 | Rice | cytosol | 43.96 | 44.41 |
| GSMUA_Achr8P18010_001 | Banana | mitochondrion | 29.19 | 33.59 |
| GSMUA_AchrUn_... | Banana | mitochondrion | 28.19 | 32.68 |
| CDX70991 | Canola | cytosol, nucleus, plastid | 13.42 | 31.5 |
| CDY09125 | Canola | nucleus | 27.52 | 30.37 |
| Bra020179.1-P | Field mustard | nucleus | 27.18 | 30.0 |
| CDY35673 | Canola | nucleus | 27.18 | 30.0 |
| EES10179 | Sorghum | plasma membrane, plastid | 28.19 | 29.89 |
| AT5G22250.1 | Thale cress | cytosol | 27.52 | 29.5 |
| Bra035002.1-P | Field mustard | nucleus | 26.17 | 28.78 |
| CDY47299 | Canola | nucleus | 26.17 | 28.68 |
| EER96736 | Sorghum | nucleus | 26.85 | 28.67 |
| CDX92371 | Canola | nucleus | 27.18 | 28.62 |
| KRH25294 | Soybean | nucleus | 26.51 | 28.42 |
| EES05957 | Sorghum | nucleus | 27.18 | 28.12 |
| Bra002400.1-P | Field mustard | nucleus | 26.51 | 28.11 |
| VIT_06s0080g01090.t01 | Wine grape | nucleus | 26.17 | 28.06 |
| CDY08688 | Canola | cytosol | 26.17 | 27.96 |
| CDX98586 | Canola | nucleus | 26.51 | 27.92 |
| KRH30376 | Soybean | nucleus | 26.51 | 27.82 |
| Solyc01g007840.2.1 | Tomato | plastid | 26.51 | 27.72 |
| CDX88806 | Canola | cytosol | 26.51 | 27.72 |
| OQU83919 | Sorghum | mitochondrion | 22.48 | 27.46 |
| PGSC0003DMT400042215 | Potato | plastid | 26.17 | 27.37 |
| Bra006616.1-P | Field mustard | cytosol | 26.17 | 27.37 |
| AT3G44260.1 | Thale cress | cytosol | 25.17 | 26.79 |
| KRH26669 | Soybean | endoplasmic reticulum, golgi | 25.84 | 24.92 |
| EES13910 | Sorghum | nucleus | 23.49 | 24.48 |
| KRH22647 | Soybean | endoplasmic reticulum, vacuole | 25.5 | 24.36 |
| KXG22837 | Sorghum | mitochondrion | 28.19 | 24.28 |
| EER87806 | Sorghum | cytosol, nucleus, plasma membrane | 25.5 | 24.05 |
| OQU83918 | Sorghum | cytosol, extracellular, nucleus | 15.1 | 23.94 |
| KXG20050 | Sorghum | plastid | 20.81 | 23.05 |
| EES11684 | Sorghum | nucleus | 25.84 | 22.99 |
| KXG38897 | Sorghum | plastid | 21.81 | 19.06 |
| OQU76452 | Sorghum | plastid | 8.05 | 14.72 |
| EER98038 | Sorghum | plastid | 25.84 | 13.37 |
| OQU76454 | Sorghum | plastid | 9.06 | 13.3 |
| OQU76453 | Sorghum | plastid | 10.74 | 10.63 |
Protein Annotations
| Gene3D:3.30.420.10 | MapMan:35.1 | UniProt:C5Y580 | EnsemblPlants:EES09326 | ProteinID:EES09326 | ProteinID:EES09326.2 |
| GO:GO:0003674 | GO:GO:0003676 | GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005623 | GO:GO:0005886 |
| GO:GO:0006950 | GO:GO:0006952 | GO:GO:0007154 | GO:GO:0007165 | GO:GO:0008150 | GO:GO:0009987 |
| GO:GO:0016020 | InterPro:IPR036397 | PANTHER:PTHR10797 | PANTHER:PTHR10797:SF6 | InterPro:RNaseH-like_sf | InterPro:RNaseH_sf |
| EnsemblPlantsGene:SORBI_3005G049100 | SUPFAM:SSF53098 | UniParc:UPI00081AC5D9 | SEG:seg | : | : |
Description
hypothetical protein
Coordinates
chr5:-:4693187..4694083
Molecular Weight (calculated)
31679.5 Da
IEP (calculated)
8.141
GRAVY (calculated)
-0.062
Length
298 amino acids
Sequence
(BLAST)
(BLAST)
001: MSRTSAAHQQ QQHQWRRRRR QHGQVFVRQV TAANLVHELS TIRGLLERYP YVTVHAEHHG AGGDEEGNNL PPGVRIDDLP AASRYALAKV DVDSSVPYSQ
101: LGITLCDANG KLPVLPAGTA AATGQSVWQV GLHDRDSVSV SGSGSGSGGA SSLSMRVFAH ALFATRVVSS AETAADAGVT WVAYGGLYHL GFLLKVLTGG
201: ARLPDTKEEL LASLRAYLGD RVVDARYVAA RLGLEGALTR VASLLGAPAA TEPWQAGERS LVACQVFMRL KGLFFAWDDT IDVHAGCIHG LQSTTSSS
101: LGITLCDANG KLPVLPAGTA AATGQSVWQV GLHDRDSVSV SGSGSGSGGA SSLSMRVFAH ALFATRVVSS AETAADAGVT WVAYGGLYHL GFLLKVLTGG
201: ARLPDTKEEL LASLRAYLGD RVVDARYVAA RLGLEGALTR VASLLGAPAA TEPWQAGERS LVACQVFMRL KGLFFAWDDT IDVHAGCIHG LQSTTSSS
001: MIKSEADLSD VIVIRDVWAY NLESEFDLIR GIVEDYPFIS MDTEFPGVIY KADLDVLRRG NPNYLYNLLK SNVDALSLIQ VGLTLSDADG NLPDLGGQKN
101: RRYIWEFNFR DFDVERDPHA PDSIELLRRH GIDFERNRRE GVESERFAEL MMSSGLICNE SVSWVTFHSA YDFGYLVKIL TRRQLPVALR EFLGLLRAFF
201: GDRVYDVKHI MRFCEQRLYG GLDRVARSLE VNRAVGKCHQ AGSDSLLTWQ AFQRMRDLYF VEDGAEKHAG VLYGLEVF
101: RRYIWEFNFR DFDVERDPHA PDSIELLRRH GIDFERNRRE GVESERFAEL MMSSGLICNE SVSWVTFHSA YDFGYLVKIL TRRQLPVALR EFLGLLRAFF
201: GDRVYDVKHI MRFCEQRLYG GLDRVARSLE VNRAVGKCHQ AGSDSLLTWQ AFQRMRDLYF VEDGAEKHAG VLYGLEVF
Arabidopsis Description
CAF1-11Probable CCR4-associated factor 1 homolog 11 [Source:UniProtKB/Swiss-Prot;Acc:Q9FMS6]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.