Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- nucleus 2
- plastid 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| KXG27287 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT3G44260.1 | KXG27287 | AT1G22920.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| OQU76452 | Sorghum | plastid | 46.84 | 77.3 |
| OQU76454 | Sorghum | plastid | 49.44 | 65.52 |
| OQU76453 | Sorghum | plastid | 50.19 | 44.85 |
| TraesCS3D01G384800.1 | Wheat | cytosol, mitochondrion, nucleus, plasma membrane | 28.62 | 44.25 |
| TraesCS6D01G318000.1 | Wheat | plastid | 46.47 | 44.17 |
| TraesCS3B01G424000.1 | Wheat | cytosol | 32.34 | 42.23 |
| TraesCS4D01G069900.1 | Wheat | plastid | 46.1 | 41.06 |
| TraesCS4B01G071200.1 | Wheat | plastid | 45.72 | 40.86 |
| TraesCS3D01G406100.1 | Wheat | nucleus, plasma membrane, plastid | 42.75 | 40.64 |
| TraesCS4A01G243800.1 | Wheat | plastid | 44.61 | 40.27 |
| TraesCS4B01G071000.1 | Wheat | plastid | 43.87 | 40.0 |
| TraesCS4A01G243700.1 | Wheat | plastid | 44.24 | 39.93 |
| TraesCS4A01G243900.1 | Wheat | plastid | 44.61 | 39.87 |
| TraesCS4B01G071100.1 | Wheat | plastid | 44.61 | 39.74 |
| TraesCS3A01G411800.1 | Wheat | mitochondrion, plastid | 42.75 | 38.33 |
| TraesCS3B01G444600.1 | Wheat | mitochondrion | 42.38 | 38.13 |
| TraesCS3B01G445400.1 | Wheat | plastid | 43.49 | 35.35 |
| KXG38897 | Sorghum | plastid | 43.87 | 34.6 |
| Bra020179.1-P | Field mustard | nucleus | 31.23 | 31.11 |
| CDY35673 | Canola | nucleus | 30.86 | 30.74 |
| CDY09125 | Canola | nucleus | 30.48 | 30.37 |
| AT5G22250.1 | Thale cress | cytosol | 30.86 | 29.86 |
| Bra002400.1-P | Field mustard | nucleus | 30.86 | 29.54 |
| CDX70991 | Canola | cytosol, nucleus, plastid | 13.75 | 29.13 |
| PGSC0003DMT400042215 | Potato | plastid | 30.86 | 29.12 |
| CDX98586 | Canola | nucleus | 30.48 | 28.98 |
| CDX92371 | Canola | nucleus | 30.48 | 28.98 |
| VIT_06s0080g01090.t01 | Wine grape | nucleus | 29.74 | 28.78 |
| KRH25294 | Soybean | nucleus | 29.37 | 28.42 |
| AT3G44260.1 | Thale cress | cytosol | 29.37 | 28.21 |
| Solyc01g007840.2.1 | Tomato | plastid | 29.74 | 28.07 |
| Bra035002.1-P | Field mustard | nucleus | 28.25 | 28.04 |
| CDY08688 | Canola | cytosol | 29.0 | 27.96 |
| EER96736 | Sorghum | nucleus | 29.0 | 27.96 |
| CDY47299 | Canola | nucleus | 28.25 | 27.94 |
| KRH30376 | Soybean | nucleus | 29.0 | 27.46 |
| EES10179 | Sorghum | plasma membrane, plastid | 27.51 | 26.33 |
| CDX88806 | Canola | cytosol | 27.88 | 26.32 |
| Bra006616.1-P | Field mustard | cytosol | 27.88 | 26.32 |
| EER87806 | Sorghum | cytosol, nucleus, plasma membrane | 30.86 | 26.27 |
| GSMUA_Achr8P18010_001 | Banana | mitochondrion | 25.28 | 26.25 |
| GSMUA_AchrUn_... | Banana | mitochondrion | 24.54 | 25.68 |
| EES05957 | Sorghum | nucleus | 26.77 | 25.0 |
| EES13910 | Sorghum | nucleus | 26.02 | 24.48 |
| KRH22647 | Soybean | endoplasmic reticulum, vacuole | 27.88 | 24.04 |
| KRH26669 | Soybean | endoplasmic reticulum, golgi | 27.51 | 23.95 |
| EES11684 | Sorghum | nucleus | 27.88 | 22.39 |
| OQU83918 | Sorghum | cytosol, extracellular, nucleus | 15.61 | 22.34 |
| OQU83919 | Sorghum | mitochondrion | 20.07 | 22.13 |
| KXG22837 | Sorghum | mitochondrion | 26.77 | 20.81 |
| EES09326 | Sorghum | mitochondrion, nucleus | 23.05 | 20.81 |
| EER98038 | Sorghum | plastid | 29.74 | 13.89 |
Protein Annotations
| EnsemblPlants:KXG20050 | EnsemblPlantsGene:SORBI_3010G147400 | Gene3D:3.30.420.10 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0005488 |
| InterPro:IPR036397 | InterPro:RNaseH-like_sf | InterPro:RNaseH_sf | InterPro:RNase_CAF1 | PANTHER:PTHR10797 | PANTHER:PTHR10797:SF7 |
| PFAM:PF04857 | ProteinID:KXG20050 | ProteinID:KXG20050.1 | SEG:seg | SUPFAM:SSF53098 | UniParc:UPI0007F2C8FD |
| UniProt:A0A194YJ96 | MapMan:35.1 | : | : | : | : |
Description
hypothetical protein
Coordinates
chr10:+:42245661..42246485
Molecular Weight (calculated)
29618.7 Da
IEP (calculated)
7.866
GRAVY (calculated)
0.081
Length
269 amino acids
Sequence
(BLAST)
(BLAST)
001: MAHYASLYHG GASMPPLPPG IPVRSVWKDN LELELRFLHS FVHNARYAAV NIHYPGVIHN GSQKHTSQTA DERYSVVKAN VDALKPIQVG LAIYNDFGHI
101: VAWEFNLRGF HPVTDPHAAN SVGYLQERSL SFDEHQVHGI TALRLATGLS GCGLFRRPQI SWTTYAGLYH VGYLMKYLSM GNQLPDSLGG FLDMVRQFLG
201: QDVYDVARIA VDCALPPGLE HVASSLFLVP AALSPRLAGA GSLLALLKYE MLYGDVSRFR GLIHGIQVI
101: VAWEFNLRGF HPVTDPHAAN SVGYLQERSL SFDEHQVHGI TALRLATGLS GCGLFRRPQI SWTTYAGLYH VGYLMKYLSM GNQLPDSLGG FLDMVRQFLG
201: QDVYDVARIA VDCALPPGLE HVASSLFLVP AALSPRLAGA GSLLALLKYE MLYGDVSRFR GLIHGIQVI
001: MAIIKPNRDL KPDGVTVVTR EVWAENLESE FELISEIIDD YPFISMDTEF PGVIFKSDLR FTNPDDLYTL LKANVDALSL IQVGLTLSDV NGNLPDLGDD
101: LHRGFIWEFN FRDFDVARDA HAPDSIELLR RQGIDFERNC RDGVESERFA ELMMSSGLVC NEEVSWVTFH SAYDFGYLMK ILTRRELPGA LGEFKRVMRV
201: LFGERVYDVK HMMKFCERRL FGGLDRVART LEVNRAVGKC HQAGSDSLLT WHAFQRMRDL YFVQDGPEKH AGVLYGLEVF
101: LHRGFIWEFN FRDFDVARDA HAPDSIELLR RQGIDFERNC RDGVESERFA ELMMSSGLVC NEEVSWVTFH SAYDFGYLMK ILTRRELPGA LGEFKRVMRV
201: LFGERVYDVK HMMKFCERRL FGGLDRVART LEVNRAVGKC HQAGSDSLLT WHAFQRMRDL YFVQDGPEKH AGVLYGLEVF
Arabidopsis Description
CAF1-9Probable CCR4-associated factor 1 homolog 9 [Source:UniProtKB/Swiss-Prot;Acc:Q9LXM2]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.