Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- plastid 4
- nucleus 1
- mitochondrion 1
- peroxisome 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| TraesCS2A01G504600.1 | |
| TraesCS2D01G505300.1 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT3G44260.1 | TraesCS2A01G504600.1 | AT1G22920.1 | 21798944 |
| AT3G44260.1 | TraesCS2D01G505300.1 | AT1G22920.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS4A01G243800.1 | Wheat | plastid | 91.03 | 91.95 |
| TraesCS4A01G243700.1 | Wheat | plastid | 90.37 | 91.28 |
| TraesCS4B01G071200.1 | Wheat | plastid | 89.7 | 89.7 |
| TraesCS4B01G071000.1 | Wheat | plastid | 87.04 | 88.81 |
| TraesCS4B01G071100.1 | Wheat | plastid | 87.71 | 87.42 |
| TraesCS4D01G069900.1 | Wheat | plastid | 86.05 | 85.76 |
| TraesCS3A01G411800.1 | Wheat | mitochondrion, plastid | 58.8 | 59.0 |
| KXG20050 | Sorghum | plastid | 39.87 | 44.61 |
| TraesCS7A01G347500.1 | Wheat | cytosol | 38.54 | 43.77 |
| TraesCS7A01G347600.1 | Wheat | cytosol | 37.54 | 42.8 |
| KXG38897 | Sorghum | plastid | 48.17 | 42.52 |
| OQU76452 | Sorghum | plastid | 21.26 | 39.26 |
| Zm00001d029981_P001 | Maize | plastid | 48.17 | 39.08 |
| OQU76454 | Sorghum | plastid | 21.26 | 31.53 |
| Bra020179.1-P | Field mustard | nucleus | 27.57 | 30.74 |
| CDY35673 | Canola | nucleus | 27.24 | 30.37 |
| CDY09125 | Canola | nucleus | 27.24 | 30.37 |
| PGSC0003DMT400042215 | Potato | plastid | 28.57 | 30.18 |
| CDX70991 | Canola | cytosol, nucleus, plastid | 12.62 | 29.92 |
| KRH30376 | Soybean | nucleus | 27.91 | 29.58 |
| Bra035002.1-P | Field mustard | nucleus | 26.58 | 29.52 |
| CDY47299 | Canola | nucleus | 26.58 | 29.41 |
| TraesCS5A01G225900.1 | Wheat | cytosol | 27.24 | 29.39 |
| VIT_06s0080g01090.t01 | Wine grape | nucleus | 26.91 | 29.14 |
| AT5G22250.1 | Thale cress | cytosol | 26.91 | 29.14 |
| KRH25294 | Soybean | nucleus | 26.91 | 29.14 |
| Solyc01g007840.2.1 | Tomato | plastid | 27.57 | 29.12 |
| AT3G44260.1 | Thale cress | cytosol | 26.91 | 28.93 |
| CDX88806 | Canola | cytosol | 27.24 | 28.77 |
| Bra006616.1-P | Field mustard | cytosol | 27.24 | 28.77 |
| CDX98586 | Canola | nucleus | 26.91 | 28.62 |
| TraesCS7A01G297000.1 | Wheat | nucleus | 27.57 | 28.23 |
| CDY08688 | Canola | cytosol | 25.91 | 27.96 |
| CDX92371 | Canola | nucleus | 26.25 | 27.92 |
| GSMUA_Achr8P18010_001 | Banana | mitochondrion | 23.92 | 27.8 |
| TraesCS2A01G583000.1 | Wheat | nucleus | 29.9 | 27.78 |
| Bra002400.1-P | Field mustard | nucleus | 25.91 | 27.76 |
| GSMUA_AchrUn_... | Banana | mitochondrion | 23.59 | 27.63 |
| TraesCS6A01G358700.1 | Wheat | cytosol | 26.25 | 27.34 |
| KRH26669 | Soybean | endoplasmic reticulum, golgi | 26.58 | 25.89 |
| KRH22647 | Soybean | endoplasmic reticulum, vacuole | 26.58 | 25.64 |
| OQU76453 | Sorghum | plastid | 23.92 | 23.92 |
| TraesCS7A01G082100.1 | Wheat | nucleus | 28.9 | 19.91 |
| TraesCS3A01G447900.1 | Wheat | cytoskeleton, cytosol, nucleus | 19.27 | 9.12 |
Protein Annotations
| EnsemblPlants:TraesCS4A01G243900.1 | EnsemblPlantsGene:TraesCS4A01G243900 | Gene3D:3.30.420.10 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0005488 |
| InterPro:IPR036397 | InterPro:RNaseH-like_sf | InterPro:RNaseH_sf | InterPro:RNase_CAF1 | PANTHER:PTHR10797 | PANTHER:PTHR10797:SF7 |
| PFAM:PF04857 | SEG:seg | SUPFAM:SSF53098 | MapMan:35.1 | : | : |
Description
No Description!
Coordinates
chr4A:+:554629644..554630886
Molecular Weight (calculated)
33137.8 Da
IEP (calculated)
9.446
GRAVY (calculated)
-0.127
Length
301 amino acids
Sequence
(BLAST)
(BLAST)
001: MNPAAGMFPV FPPPPPPPFH HTFPVQPPPY FYHAPMSPVW ASWPVPVRSV WASNFKHESA NLCHVARRAQ YVAVDVHYPG VVHHPGKDHN ALTVEERYAL
101: VKANVDDLKP LQVGVALYDS HGGYIAAWEF NLRDFRPHAD PRDENSLAYL AGRGLDVGAL RDHGVSADML SKKLFESGLV GARRGRSRSW ITYAGAYHVA
201: YLLKVVTGGA ALPRDVAGFN GAVRRYLGDQ VYDVVRMAAD CPAMPIGLEH IADYLGFHPP LGSPRLAAAA SVHALQVFMR LKYVELGGDV RKYRGLLKGL
301: H
101: VKANVDDLKP LQVGVALYDS HGGYIAAWEF NLRDFRPHAD PRDENSLAYL AGRGLDVGAL RDHGVSADML SKKLFESGLV GARRGRSRSW ITYAGAYHVA
201: YLLKVVTGGA ALPRDVAGFN GAVRRYLGDQ VYDVVRMAAD CPAMPIGLEH IADYLGFHPP LGSPRLAAAA SVHALQVFMR LKYVELGGDV RKYRGLLKGL
301: H
001: MKQISSGEVW RWNKEVEMNS IRDCLKHCSS IAIDTEFPGC LKETPMDASE EIRYRDMKFN VDNTHLIQLG FTLFDRRGFA KTWEINLSDF DEHKCFKNDK
101: SIAFLKSNGL NLDKIREEGI GIDEFFRDFS QILTEKDGKI TWVNFQGSYD NAYLVKGLTG GKPLPETKEE FHETVQQLLG KFVFDVKKIA ESCSGLSSQF
201: GLQRIADVLQ MKRVGKAHHA GSDSELTARV FTKLTFDLLN SRKQSVRRVD HQQFQLEQQQ HQQFMMTRCY IPIPMPIPRP RPVMFAAHHQ NPYFGGGYFR
301: MPVQGMNYVL
101: SIAFLKSNGL NLDKIREEGI GIDEFFRDFS QILTEKDGKI TWVNFQGSYD NAYLVKGLTG GKPLPETKEE FHETVQQLLG KFVFDVKKIA ESCSGLSSQF
201: GLQRIADVLQ MKRVGKAHHA GSDSELTARV FTKLTFDLLN SRKQSVRRVD HQQFQLEQQQ HQQFMMTRCY IPIPMPIPRP RPVMFAAHHQ NPYFGGGYFR
301: MPVQGMNYVL
Arabidopsis Description
CAF1-3Putative CCR4-associated factor 1 homolog 3 [Source:UniProtKB/Swiss-Prot;Acc:Q9SFX6]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.