Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 2
- mitochondrion 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| TraesCS2A01G504600.1 | |
| TraesCS2D01G505300.1 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT3G44260.1 | TraesCS2A01G504600.1 | AT1G22920.1 | 21798944 |
| AT3G44260.1 | TraesCS2D01G505300.1 | AT1G22920.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS2D01G597200.1 | Wheat | nucleus | 94.44 | 93.58 |
| TraesCS2B01G603600.1 | Wheat | cytosol | 93.83 | 93.54 |
| HORVU2Hr1G123480.1 | Barley | nucleus | 83.33 | 83.08 |
| Zm00001d026657_P001 | Maize | cytosol | 55.56 | 60.2 |
| CDX70991 | Canola | cytosol, nucleus, plastid | 23.15 | 59.06 |
| Zm00001d001774_P001 | Maize | nucleus | 53.09 | 57.91 |
| Os04t0684900-02 | Rice | nucleus | 56.17 | 55.32 |
| GSMUA_Achr9P29700_001 | Banana | cytosol | 35.19 | 53.52 |
| EES11684 | Sorghum | nucleus | 54.01 | 52.24 |
| GSMUA_Achr6P19450_001 | Banana | cytosol | 39.2 | 52.05 |
| GSMUA_Achr6P19460_001 | Banana | cytosol | 27.47 | 51.45 |
| AT5G22250.1 | Thale cress | cytosol | 42.28 | 49.28 |
| Bra020179.1-P | Field mustard | nucleus | 41.05 | 49.26 |
| VIT_06s0080g01090.t01 | Wine grape | nucleus | 41.98 | 48.92 |
| CDY09125 | Canola | nucleus | 40.74 | 48.89 |
| CDY35673 | Canola | nucleus | 40.43 | 48.52 |
| KRH25294 | Soybean | nucleus | 41.36 | 48.2 |
| Bra002400.1-P | Field mustard | nucleus | 41.36 | 47.69 |
| CDX92371 | Canola | nucleus | 41.36 | 47.35 |
| CDY47299 | Canola | nucleus | 39.51 | 47.06 |
| CDX98586 | Canola | nucleus | 41.05 | 47.0 |
| Bra035002.1-P | Field mustard | nucleus | 39.2 | 46.86 |
| KRH30376 | Soybean | nucleus | 40.74 | 46.48 |
| AT3G44260.1 | Thale cress | cytosol | 39.51 | 45.71 |
| PGSC0003DMT400042215 | Potato | plastid | 40.12 | 45.61 |
| CDX88806 | Canola | cytosol | 40.12 | 45.61 |
| CDY08688 | Canola | cytosol | 39.2 | 45.52 |
| Bra006616.1-P | Field mustard | cytosol | 39.81 | 45.26 |
| KRH26669 | Soybean | endoplasmic reticulum, golgi | 42.28 | 44.34 |
| Solyc01g007840.2.1 | Tomato | plastid | 38.89 | 44.21 |
| TraesCS5A01G225900.1 | Wheat | cytosol | 37.96 | 44.09 |
| TraesCS6A01G358700.1 | Wheat | cytosol | 37.96 | 42.56 |
| TraesCS7A01G297000.1 | Wheat | nucleus | 38.27 | 42.18 |
| KRH22647 | Soybean | endoplasmic reticulum, vacuole | 40.43 | 41.99 |
| TraesCS7A01G347600.1 | Wheat | cytosol | 24.38 | 29.92 |
| TraesCS4A01G243900.1 | Wheat | plastid | 27.78 | 29.9 |
| TraesCS3A01G411800.1 | Wheat | mitochondrion, plastid | 27.47 | 29.67 |
| TraesCS7A01G347500.1 | Wheat | cytosol | 24.07 | 29.43 |
| TraesCS4A01G243700.1 | Wheat | plastid | 26.85 | 29.19 |
| TraesCS4A01G243800.1 | Wheat | plastid | 26.85 | 29.19 |
| TraesCS7A01G082100.1 | Wheat | nucleus | 30.25 | 22.43 |
| TraesCS3A01G447900.1 | Wheat | cytoskeleton, cytosol, nucleus | 24.07 | 12.26 |
Protein Annotations
| EnsemblPlants:TraesCS2A01G583000.1 | EnsemblPlantsGene:TraesCS2A01G583000 | Gene3D:3.30.420.10 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0005488 |
| InterPro:IPR036397 | InterPro:RNaseH-like_sf | InterPro:RNaseH_sf | InterPro:RNase_CAF1 | PANTHER:PTHR10797 | PANTHER:PTHR10797:SF3 |
| PFAM:PF04857 | SEG:seg | SUPFAM:SSF53098 | TMHMM:TMhelix | MapMan:35.1 | : |
Description
No Description!
Coordinates
chr2A:+:775165226..775166200
Molecular Weight (calculated)
34789.7 Da
IEP (calculated)
9.593
GRAVY (calculated)
-0.068
Length
324 amino acids
Sequence
(BLAST)
(BLAST)
001: MKLQTEAAAA GGEGRLMIRQ VWANNVESEF QAIRQVAERF PYVSMDTEFP GVIHCPSKHH ATLTPSERYA ALKANVDALH LIQVGLAFAA SPDAAPAVAF
101: EINLREFDPR VHRHNPSSVA LLAGHGLDFA KQRRQGVDAR VLAALLMSSG LVCSGASAPT WVTFHSAYDF GYLVKLLMGR KLPRTLPEFL GLVRVFFGDQ
201: VYDARHVMDS CAGLYGGLDA LAAQLGVQRA AGMSHQAGSD AALTWDVFRR IREVYFAGGS RRQGQGVGSF AGVLYGLELE LHLATPLAPA PAADNVNRNN
301: KNKCGNGNGA GGRGNNRRAV AALR
101: EINLREFDPR VHRHNPSSVA LLAGHGLDFA KQRRQGVDAR VLAALLMSSG LVCSGASAPT WVTFHSAYDF GYLVKLLMGR KLPRTLPEFL GLVRVFFGDQ
201: VYDARHVMDS CAGLYGGLDA LAAQLGVQRA AGMSHQAGSD AALTWDVFRR IREVYFAGGS RRQGQGVGSF AGVLYGLELE LHLATPLAPA PAADNVNRNN
301: KNKCGNGNGA GGRGNNRRAV AALR
001: MSLFLKDDSI QIREVWNDNL QEEMDLIRDV VDDFPYVAMD TEFPGIVVRP VGTFKSNADY HYETLKTNVN ILKMIQLGLT FSNEQGNLPT CGTDKYCIWQ
101: FNFREFDLDS DIFALDSIEL LKQSGIDLAK NTLDGIDSKR FAELLMSSGI VLNENVHWVT FHSGYDFGYL LKLLTCQNLP DSQTDFFKLI NVYFPTVYDI
201: KHLMKFCNSL HGGLNKLAEL LEVERVGICH QAGSDSLLTS CTFRKLKENF FVGPLHKYSG VLYGLGVENG QVAI
101: FNFREFDLDS DIFALDSIEL LKQSGIDLAK NTLDGIDSKR FAELLMSSGI VLNENVHWVT FHSGYDFGYL LKLLTCQNLP DSQTDFFKLI NVYFPTVYDI
201: KHLMKFCNSL HGGLNKLAEL LEVERVGICH QAGSDSLLTS CTFRKLKENF FVGPLHKYSG VLYGLGVENG QVAI
Arabidopsis Description
Polynucleotidyl transferase, ribonuclease H-like superfamily protein [Source:UniProtKB/TrEMBL;Acc:F4HU15]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.