Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- mitochondrion 1
- cytosol 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Zm00001d002027_P002 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT3G44260.1 | Zm00001d002027_P002 | AT1G22920.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Zm00001d001774_P001 | Maize | nucleus | 83.95 | 84.51 |
| EES11684 | Sorghum | nucleus | 86.29 | 77.01 |
| GSMUA_Achr9P29700_001 | Banana | cytosol | 40.13 | 56.34 |
| CDX70991 | Canola | cytosol, nucleus, plastid | 23.75 | 55.91 |
| TraesCS2D01G597200.1 | Wheat | nucleus | 60.87 | 55.66 |
| TraesCS2A01G583000.1 | Wheat | nucleus | 60.2 | 55.56 |
| GSMUA_Achr6P19450_001 | Banana | cytosol | 45.15 | 55.33 |
| HORVU2Hr1G123480.1 | Barley | nucleus | 59.87 | 55.08 |
| TraesCS2B01G603600.1 | Wheat | cytosol | 59.53 | 54.77 |
| Os04t0684900-02 | Rice | nucleus | 60.2 | 54.71 |
| Bra020179.1-P | Field mustard | nucleus | 46.49 | 51.48 |
| CDY09125 | Canola | nucleus | 45.82 | 50.74 |
| CDY35673 | Canola | nucleus | 45.48 | 50.37 |
| KRH25294 | Soybean | nucleus | 46.82 | 50.36 |
| Bra035002.1-P | Field mustard | nucleus | 45.48 | 50.18 |
| CDY47299 | Canola | nucleus | 45.48 | 50.0 |
| VIT_06s0080g01090.t01 | Wine grape | nucleus | 46.15 | 49.64 |
| GSMUA_Achr6P19460_001 | Banana | cytosol | 28.43 | 49.13 |
| AT5G22250.1 | Thale cress | cytosol | 45.48 | 48.92 |
| CDX92371 | Canola | nucleus | 45.82 | 48.41 |
| Bra002400.1-P | Field mustard | nucleus | 45.48 | 48.4 |
| AT3G44260.1 | Thale cress | cytosol | 45.15 | 48.21 |
| CDX98586 | Canola | nucleus | 45.48 | 48.06 |
| CDY08688 | Canola | cytosol | 44.82 | 48.03 |
| KRH30376 | Soybean | nucleus | 45.15 | 47.54 |
| Bra006616.1-P | Field mustard | cytosol | 44.82 | 47.02 |
| CDX88806 | Canola | cytosol | 44.82 | 47.02 |
| Zm00001d020486_P001 | Maize | extracellular | 43.81 | 46.95 |
| PGSC0003DMT400042215 | Potato | plastid | 43.48 | 45.61 |
| KRH26669 | Soybean | endoplasmic reticulum, golgi | 45.82 | 44.34 |
| Solyc01g007840.2.1 | Tomato | plastid | 41.81 | 43.86 |
| Zm00001d052031_P001 | Maize | cytosol | 41.81 | 43.55 |
| KRH22647 | Soybean | endoplasmic reticulum, vacuole | 43.48 | 41.67 |
| Zm00001d050433_P001 | Maize | nucleus | 37.46 | 40.0 |
| Zm00001d018378_P001 | Maize | nucleus | 9.7 | 36.71 |
| Zm00001d007662_P001 | Maize | extracellular, nucleus, plastid | 13.38 | 30.77 |
| Zm00001d007664_P001 | Maize | extracellular, nucleus, plastid | 13.38 | 30.77 |
| Zm00001d007669_P001 | Maize | extracellular, nucleus, plastid | 13.38 | 30.77 |
| Zm00001d007666_P001 | Maize | extracellular, nucleus, plastid | 13.38 | 29.2 |
| Zm00001d002885_P001 | Maize | plastid | 31.1 | 29.15 |
| Zm00001d032158_P002 | Maize | plastid | 38.46 | 28.89 |
| Zm00001d048746_P001 | Maize | nucleus, plasma membrane, plastid | 28.09 | 28.77 |
| Zm00001d048748_P001 | Maize | nucleus, plasma membrane, plastid | 28.09 | 28.67 |
| Zm00001d048752_P001 | Maize | nucleus, plasma membrane, plastid | 28.09 | 28.57 |
| Zm00001d048754_P001 | Maize | nucleus, plasma membrane, plastid | 28.09 | 28.57 |
| Zm00001d048757_P001 | Maize | nucleus, plasma membrane, plastid | 27.76 | 28.42 |
| Zm00001d007654_P001 | Maize | nucleus, plasma membrane, plastid | 26.09 | 27.08 |
| Zm00001d029981_P001 | Maize | plastid | 30.43 | 24.53 |
| Zm00001d031508_P001 | Maize | cytosol | 30.43 | 23.1 |
| Zm00001d007893_P001 | Maize | nucleus | 31.77 | 19.04 |
Protein Annotations
| EnsemblPlants:Zm00001d026657_P001 | EnsemblPlants:Zm00001d026657_T001 | EnsemblPlantsGene:Zm00001d026657 | Gene3D:3.30.420.10 | GO:GO:0003674 | GO:GO:0003676 |
| GO:GO:0005488 | InterPro:IPR036397 | InterPro:RNaseH-like_sf | InterPro:RNaseH_sf | InterPro:RNase_CAF1 | PANTHER:PTHR10797 |
| PANTHER:PTHR10797:SF3 | PFAM:PF04857 | ProteinID:AQK47409.1 | SEG:seg | SUPFAM:SSF53098 | UniParc:UPI000842AB42 |
| UniProt:A0A1D6JIJ1 | MapMan:35.1 | : | : | : | : |
Description
Probable CCR4-associated factor 1 homolog 11
Coordinates
chr10:+:149524994..149525893
Molecular Weight (calculated)
33146.1 Da
IEP (calculated)
9.761
GRAVY (calculated)
-0.084
Length
299 amino acids
Sequence
(BLAST)
(BLAST)
001: MPSVQAEVGG GWRPKQQQYP LEIREVWADN VEREFKLIRA AIERFPYVSM DTEFPGVIHH PPPSVHHSAL TPPQRYALLK SNVDALHLIQ VGLAFAPSAS
101: SPPALAFQVN LREFDPRLHR HAPDSVRLLA ASGLDLPAHR ARGVSARAFA ALLMSSGLVC NPDVAWVTFA SAYDMAYLVK VLMGRKLPRA LPEFLRYVRV
201: YFGNAVYDVK HMARVASAPA LLGGLERVAA ALRVRRAAGR SHQAASDSVL TWDTFREMAR LYFPKEGSLE MCAGVLYGLE LHDDDGRGTK PRAEYALLR
101: SPPALAFQVN LREFDPRLHR HAPDSVRLLA ASGLDLPAHR ARGVSARAFA ALLMSSGLVC NPDVAWVTFA SAYDMAYLVK VLMGRKLPRA LPEFLRYVRV
201: YFGNAVYDVK HMARVASAPA LLGGLERVAA ALRVRRAAGR SHQAASDSVL TWDTFREMAR LYFPKEGSLE MCAGVLYGLE LHDDDGRGTK PRAEYALLR
001: MSLFLKDDSI QIREVWNDNL QEEMDLIRDV VDDFPYVAMD TEFPGIVVRP VGTFKSNADY HYETLKTNVN ILKMIQLGLT FSNEQGNLPT CGTDKYCIWQ
101: FNFREFDLDS DIFALDSIEL LKQSGIDLAK NTLDGIDSKR FAELLMSSGI VLNENVHWVT FHSGYDFGYL LKLLTCQNLP DSQTDFFKLI NVYFPTVYDI
201: KHLMKFCNSL HGGLNKLAEL LEVERVGICH QAGSDSLLTS CTFRKLKENF FVGPLHKYSG VLYGLGVENG QVAI
101: FNFREFDLDS DIFALDSIEL LKQSGIDLAK NTLDGIDSKR FAELLMSSGI VLNENVHWVT FHSGYDFGYL LKLLTCQNLP DSQTDFFKLI NVYFPTVYDI
201: KHLMKFCNSL HGGLNKLAEL LEVERVGICH QAGSDSLLTS CTFRKLKENF FVGPLHKYSG VLYGLGVENG QVAI
Arabidopsis Description
Polynucleotidyl transferase, ribonuclease H-like superfamily protein [Source:UniProtKB/TrEMBL;Acc:F4HU15]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.