Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- mitochondrion 1
- cytosol 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Zm00001d002027_P002 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT3G44260.1 | Zm00001d002027_P002 | AT1G22920.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Zm00001d007893_P001 | Maize | nucleus | 75.63 | 59.72 |
| EER98038 | Sorghum | plastid | 58.12 | 39.76 |
| GSMUA_AchrUn_... | Banana | mitochondrion | 23.35 | 35.8 |
| GSMUA_Achr8P18010_001 | Banana | mitochondrion | 23.35 | 35.52 |
| Zm00001d007669_P001 | Maize | extracellular, nucleus, plastid | 11.68 | 35.38 |
| Zm00001d007664_P001 | Maize | extracellular, nucleus, plastid | 11.68 | 35.38 |
| Zm00001d007662_P001 | Maize | extracellular, nucleus, plastid | 11.68 | 35.38 |
| Zm00001d007666_P001 | Maize | extracellular, nucleus, plastid | 11.93 | 34.31 |
| Zm00001d002885_P001 | Maize | plastid | 27.41 | 33.86 |
| Zm00001d020486_P001 | Maize | extracellular | 23.1 | 32.62 |
| Bra020179.1-P | Field mustard | nucleus | 22.34 | 32.59 |
| Solyc01g007840.2.1 | Tomato | plastid | 23.1 | 31.93 |
| CDY09125 | Canola | nucleus | 21.83 | 31.85 |
| Zm00001d048757_P001 | Maize | nucleus, plasma membrane, plastid | 23.6 | 31.85 |
| Zm00001d048746_P001 | Maize | nucleus, plasma membrane, plastid | 23.35 | 31.51 |
| CDY35673 | Canola | nucleus | 21.57 | 31.48 |
| CDX92371 | Canola | nucleus | 22.59 | 31.45 |
| Zm00001d001774_P001 | Maize | nucleus | 23.6 | 31.31 |
| Zm00001d048754_P001 | Maize | nucleus, plasma membrane, plastid | 23.35 | 31.29 |
| Zm00001d048752_P001 | Maize | nucleus, plasma membrane, plastid | 23.35 | 31.29 |
| PGSC0003DMT400042215 | Potato | plastid | 22.59 | 31.23 |
| Zm00001d048748_P001 | Maize | nucleus, plasma membrane, plastid | 23.1 | 31.06 |
| Os07t0169800-00 | Rice | nucleus | 39.34 | 31.0 |
| Bra035002.1-P | Field mustard | nucleus | 21.32 | 31.0 |
| Bra002400.1-P | Field mustard | nucleus | 22.08 | 30.96 |
| VIT_06s0080g01090.t01 | Wine grape | nucleus | 21.83 | 30.94 |
| CDY47299 | Canola | nucleus | 21.32 | 30.88 |
| CDX98586 | Canola | nucleus | 22.08 | 30.74 |
| KRH30376 | Soybean | nucleus | 22.08 | 30.63 |
| KRH25294 | Soybean | nucleus | 21.57 | 30.58 |
| Zm00001d026657_P001 | Maize | cytosol | 23.1 | 30.43 |
| Zm00001d007654_P001 | Maize | nucleus, plasma membrane, plastid | 22.08 | 30.21 |
| CDY08688 | Canola | cytosol | 21.07 | 29.75 |
| AT5G22250.1 | Thale cress | cytosol | 20.81 | 29.5 |
| CDX88806 | Canola | cytosol | 21.32 | 29.47 |
| AT3G44260.1 | Thale cress | cytosol | 20.81 | 29.29 |
| Bra006616.1-P | Field mustard | cytosol | 21.07 | 29.12 |
| Zm00001d052031_P001 | Maize | cytosol | 21.07 | 28.92 |
| KRH26669 | Soybean | endoplasmic reticulum, golgi | 22.34 | 28.48 |
| CDX70991 | Canola | cytosol, nucleus, plastid | 9.14 | 28.35 |
| Zm00001d018378_P001 | Maize | nucleus | 5.58 | 27.85 |
| KRH22647 | Soybean | endoplasmic reticulum, vacuole | 21.83 | 27.56 |
| Zm00001d050433_P001 | Maize | nucleus | 18.78 | 26.43 |
| Zm00001d029981_P001 | Maize | plastid | 20.81 | 22.1 |
| Zm00001d032158_P002 | Maize | plastid | 20.81 | 20.6 |
Protein Annotations
| EnsemblPlants:Zm00001d031508_P001 | EnsemblPlants:Zm00001d031508_T001 | EnsemblPlantsGene:Zm00001d031508 | Gene3D:3.30.420.10 | GO:GO:0003674 | GO:GO:0003676 |
| GO:GO:0005488 | InterPro:IPR036397 | InterPro:RNaseH-like_sf | InterPro:RNaseH_sf | InterPro:RNase_CAF1 | PANTHER:PTHR10797 |
| PANTHER:PTHR10797:SF13 | PFAM:PF04857 | ProteinID:ONM03017.1 | SEG:seg | SUPFAM:SSF53098 | UniParc:UPI000843C0F8 |
| UniProt:A0A1D6KJ93 | MapMan:35.1 | : | : | : | : |
Description
Putative CCR4-associated factor 1 homolog 3
Coordinates
chr1:+:192284598..192288060
Molecular Weight (calculated)
43993.7 Da
IEP (calculated)
7.325
GRAVY (calculated)
-0.215
Length
394 amino acids
Sequence
(BLAST)
(BLAST)
001: MDAPVAESAE VMALNRKQIL SIWRSSPADM VEAVADNIQQ LVGQQPQRPR RNVRGEHGAE EISAVDGVTG LAGGTPVPPP MNMRFIPNTM PTTDAMDVGS
101: SAPRTPSTSS SERTPSPLQR VEVRQVWAHN FDGEAKLIES LLPKFQYVAV DMEFSGMVYR PVGPVYKLEP AERYRLLRCT VDTLHLHPVQ LGLTLFDAGC
201: VLLGGHGGAT QYVWQYNFRD FDVRQHRHVA ESVAALWSRG VDLDWMRQYG IAAEVAFGPH LRKWTRAGLG RADVVTSCGG YDLAYLVKMM FGTGFRMPRS
301: TTEFDAVVKA VLHRRRVFDI GEMARLFPRE HLRRGLDNIA GQLNAAWFAA DAARQASYDS LRTCYTFMNL REIYFDGDDK LAGVDRILAE VTVF
101: SAPRTPSTSS SERTPSPLQR VEVRQVWAHN FDGEAKLIES LLPKFQYVAV DMEFSGMVYR PVGPVYKLEP AERYRLLRCT VDTLHLHPVQ LGLTLFDAGC
201: VLLGGHGGAT QYVWQYNFRD FDVRQHRHVA ESVAALWSRG VDLDWMRQYG IAAEVAFGPH LRKWTRAGLG RADVVTSCGG YDLAYLVKMM FGTGFRMPRS
301: TTEFDAVVKA VLHRRRVFDI GEMARLFPRE HLRRGLDNIA GQLNAAWFAA DAARQASYDS LRTCYTFMNL REIYFDGDDK LAGVDRILAE VTVF
001: MIKSEADLSD VIVIRDVWAY NLESEFDLIR GIVEDYPFIS MDTEFPGVIY KADLDVLRRG NPNYLYNLLK SNVDALSLIQ VGLTLSDADG NLPDLGGQKN
101: RRYIWEFNFR DFDVERDPHA PDSIELLRRH GIDFERNRRE GVESERFAEL MMSSGLICNE SVSWVTFHSA YDFGYLVKIL TRRQLPVALR EFLGLLRAFF
201: GDRVYDVKHI MRFCEQRLYG GLDRVARSLE VNRAVGKCHQ AGSDSLLTWQ AFQRMRDLYF VEDGAEKHAG VLYGLEVF
101: RRYIWEFNFR DFDVERDPHA PDSIELLRRH GIDFERNRRE GVESERFAEL MMSSGLICNE SVSWVTFHSA YDFGYLVKIL TRRQLPVALR EFLGLLRAFF
201: GDRVYDVKHI MRFCEQRLYG GLDRVARSLE VNRAVGKCHQ AGSDSLLTWQ AFQRMRDLYF VEDGAEKHAG VLYGLEVF
Arabidopsis Description
CAF1-11Probable CCR4-associated factor 1 homolog 11 [Source:UniProtKB/Swiss-Prot;Acc:Q9FMS6]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.