CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 4
nucleus 2
mitochondrion 1
vacuole 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
KXG27287

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G44260.1	KXG27287	AT1G22920.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d031508_P001	Maize	cytosol	39.76	58.12
Zm00001d007893_P001	Maize	nucleus	49.65	57.31
Bra020179.1-P	Field mustard	nucleus	19.97	42.59
CDY35673	Canola	nucleus	19.27	41.11
CDY09125	Canola	nucleus	19.27	41.11
VIT_06s0080g01090.t01	Wine grape	nucleus	19.62	40.65
Bra035002.1-P	Field mustard	nucleus	18.92	40.22
KRH25294	Soybean	nucleus	19.27	39.93
CDY47299	Canola	nucleus	18.75	39.71
KRH30376	Soybean	nucleus	19.27	39.08
AT5G22250.1	Thale cress	cytosol	18.75	38.85
GSMUA_AchrUn_...	Banana	mitochondrion	17.19	38.52
CDY08688	Canola	cytosol	18.58	38.35
GSMUA_Achr8P18010_001	Banana	mitochondrion	17.19	38.22
AT3G44260.1	Thale cress	cytosol	18.58	38.21
Solyc01g007840.2.1	Tomato	plastid	18.75	37.89
EER96736	Sorghum	nucleus	18.23	37.63
CDX92371	Canola	nucleus	18.4	37.46
Bra002400.1-P	Field mustard	nucleus	18.23	37.37
Os07t0169800-00	Rice	nucleus	32.29	37.2
CDX98586	Canola	nucleus	18.23	37.1
PGSC0003DMT400042215	Potato	plastid	18.23	36.84
CDX88806	Canola	cytosol	18.06	36.49
EES05957	Sorghum	nucleus	18.23	36.46
KRH26669	Soybean	endoplasmic reticulum, golgi	19.44	36.25
Bra006616.1-P	Field mustard	cytosol	17.88	36.14
EER87806	Sorghum	cytosol, nucleus, plasma membrane	19.27	35.13
CDX70991	Canola	cytosol, nucleus, plastid	7.64	34.65
KRH22647	Soybean	endoplasmic reticulum, vacuole	18.23	33.65
EES10179	Sorghum	plasma membrane, plastid	16.32	33.45
EES13910	Sorghum	nucleus	16.15	32.52
EES11684	Sorghum	nucleus	18.4	31.64
KXG22837	Sorghum	mitochondrion	18.4	30.64
KXG20050	Sorghum	plastid	13.89	29.74
OQU76452	Sorghum	plastid	8.33	29.45
OQU83919	Sorghum	mitochondrion	11.46	27.05
KXG38897	Sorghum	plastid	15.97	26.98
OQU83918	Sorghum	cytosol, extracellular, nucleus	8.68	26.6
EES09326	Sorghum	mitochondrion, nucleus	13.37	25.84
OQU76454	Sorghum	plastid	8.51	24.14
OQU76453	Sorghum	plastid	9.03	17.28

Protein Annotations

Gene3D:3.30.420.10	MapMan:35.1	UniProt:C5XAC6	EnsemblPlants:EER98038	ProteinID:EER98038	ProteinID:EER98038.1
GO:GO:0000932	GO:GO:0003674	GO:GO:0003676	GO:GO:0003824	GO:GO:0004518	GO:GO:0004535
GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0006139
GO:GO:0006412	GO:GO:0008150	GO:GO:0008152	GO:GO:0009056	GO:GO:0009058	GO:GO:0009987
GO:GO:0016787	GO:GO:0017148	GO:GO:0019538	GO:GO:0030015	GO:GO:0043928	GO:GO:0090503
InterPro:IPR036397	PFAM:PF04857	PANTHER:PTHR10797	PANTHER:PTHR10797:SF13	InterPro:RNaseH-like_sf	InterPro:RNaseH_sf
InterPro:RNase_CAF1	EnsemblPlantsGene:SORBI_3002G046600	SUPFAM:SSF53098	UniParc:UPI0001A841D1	RefSeq:XP_002461517.1	SEG:seg

Description

hypothetical protein

Coordinates

chr2:-:4365281..4367011

Molecular Weight (calculated)

61453.7 Da

IEP (calculated)

9.177

GRAVY (calculated)

-0.194

Length

576 amino acids

Sequence
(BLAST)

001: MCGAPVFPAI PTPFVYRPQA AAPADVTNVA LPPPPSTPSL DTSAPPHEHD TLPESYAALL SRQQLMAQAT RELLAAAQQQ MARPDRQASA KVATRGAPVP
101: PPIKMRFVPN TMPAADVYRP QAAVVDVTDV GSPPPSTPPG SCSSLETGAP PHDTLAESYA AALLSQQQQQ LMAGATRGLL AAAAQQMARP DRQQVATRGA
201: RVASPIKMRF VVPNTMPAPA ADVMDAGSSA PSTPSPSRCS SSLETTPSPR GPLPPSLPDP AAACASHHPL TPGAAWGLAT KPPMVPVPFP PARPPAPHVE
301: VRQVWAHNFE QEAKLIESLL PKFRYLAVDT KFPGTVYRPA GPAHTLKPEE RYKLLRSTVD ALDPIQLGLT LFDDAGCRLP SLVGLGDGAT AGTRYVWEFN
401: FREFDVRRHR HTPESIAALR ARGVDLDRTR RDGVDAAAAF GPRLRKWARA GLGRAGVVTA SGGYDLAYLV KMMLGPGFRM PASAAEFEVV AGALLRRRRV
501: FDVREMARLC PSDHLRRGLD SVAAKLNVAR AAGEAHQAGY DSLLTCYTFV KLREICFDDD GKLTSVDGIL AEITAL

Best Arabidopsis Sequence Match ( AT1G15920.1 )
(BLAST)

001: MSQAPNPEEE DDTIEIREVW NHNLEQEMAL IEQSIDDFPY VAMDTEFPGI VCKTVTANPN PNPYSIHYEY NYDTLKANVN MLKLIQLGLT LSDEKGNLPT
101: CGTNKQCIWQ FNFREFNVIS DMFALDSIEL LRKSAIDLEK NNECGVDAKR FAELLMGSGV VLNDKIHWVT FHCGYDFGYL LKLLSGKELP EEISDFFDQM
201: EKFFPVVYDI KYLMGFCTNL YGGLEKIAEL LGVKRVGISH QAGSDSLLTL RTFIKMKEFF FTGSLLKYSG FLFGLDNPRL LTGSKN

Arabidopsis Description

CAF1-2Probable CCR4-associated factor 1 homolog 2 [Source:UniProtKB/Swiss-Prot;Acc:Q9S9P2]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.