Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- cytosol 3
- nucleus 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| VIT_03s0038g04360.t01 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT3G44260.1 | VIT_03s0038g04360.t01 | AT1G22920.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX70991 | Canola | cytosol, nucleus, plastid | 36.33 | 79.53 |
| Bra035002.1-P | Field mustard | nucleus | 74.1 | 76.01 |
| CDY47299 | Canola | nucleus | 74.1 | 75.74 |
| KRH25294 | Soybean | nucleus | 74.82 | 74.82 |
| KRH30376 | Soybean | nucleus | 75.54 | 73.94 |
| AT3G44260.1 | Thale cress | cytosol | 74.1 | 73.57 |
| CDY09125 | Canola | nucleus | 71.22 | 73.33 |
| CDY08688 | Canola | cytosol | 73.38 | 73.12 |
| Bra020179.1-P | Field mustard | nucleus | 70.86 | 72.96 |
| CDY35673 | Canola | nucleus | 70.86 | 72.96 |
| AT5G22250.1 | Thale cress | cytosol | 71.94 | 71.94 |
| CDX98586 | Canola | nucleus | 72.66 | 71.38 |
| CDX92371 | Canola | nucleus | 72.3 | 71.02 |
| Bra002400.1-P | Field mustard | nucleus | 71.22 | 70.46 |
| CDX88806 | Canola | cytosol | 71.58 | 69.82 |
| Bra006616.1-P | Field mustard | cytosol | 71.58 | 69.82 |
| KRH26669 | Soybean | endoplasmic reticulum, golgi | 75.9 | 68.28 |
| VIT_08s0007g02570.t01 | Wine grape | nucleus | 67.99 | 66.08 |
| KRH22647 | Soybean | endoplasmic reticulum, vacuole | 74.1 | 66.03 |
| GSMUA_Achr9P29700_001 | Banana | cytosol | 47.84 | 62.44 |
| PGSC0003DMT400042215 | Potato | plastid | 61.87 | 60.35 |
| GSMUA_Achr6P19450_001 | Banana | cytosol | 52.88 | 60.25 |
| VIT_04s0008g05850.t01 | Wine grape | nucleus | 58.27 | 59.34 |
| Solyc01g007840.2.1 | Tomato | plastid | 60.43 | 58.95 |
| GSMUA_Achr6P19460_001 | Banana | cytosol | 35.97 | 57.8 |
| VIT_09s0070g00060.t01 | Wine grape | nucleus | 54.32 | 55.11 |
| VIT_11s0037g00100.t01 | Wine grape | nucleus | 52.88 | 54.44 |
| Zm00001d026657_P001 | Maize | cytosol | 49.64 | 46.15 |
| Zm00001d001774_P001 | Maize | nucleus | 48.92 | 45.79 |
| GSMUA_Achr8P18010_001 | Banana | mitochondrion | 40.29 | 43.24 |
| Os04t0684900-02 | Rice | nucleus | 50.72 | 42.86 |
| TraesCS2D01G597200.1 | Wheat | nucleus | 50.0 | 42.51 |
| GSMUA_AchrUn_... | Banana | mitochondrion | 39.21 | 42.41 |
| TraesCS2B01G603600.1 | Wheat | cytosol | 49.28 | 42.15 |
| TraesCS2A01G583000.1 | Wheat | nucleus | 48.92 | 41.98 |
| HORVU2Hr1G123480.1 | Barley | nucleus | 48.2 | 41.23 |
| EES11684 | Sorghum | nucleus | 49.28 | 40.9 |
| TraesCSU01G062600.1 | Wheat | cytosol | 36.69 | 39.69 |
| TraesCS7D01G075800.1 | Wheat | nucleus | 36.33 | 39.15 |
| Zm00001d007669_P001 | Maize | extracellular, nucleus, plastid | 17.63 | 37.69 |
| Zm00001d007662_P001 | Maize | extracellular, nucleus, plastid | 17.63 | 37.69 |
| Zm00001d007664_P001 | Maize | extracellular, nucleus, plastid | 17.63 | 37.69 |
| Zm00001d007666_P001 | Maize | extracellular, nucleus, plastid | 18.35 | 37.23 |
| Os10t0123900-00 | Rice | extracellular, mitochondrion, nucleus | 34.89 | 35.27 |
| EER87806 | Sorghum | cytosol, nucleus, plasma membrane | 38.13 | 33.54 |
| Zm00001d048746_P001 | Maize | nucleus, plasma membrane, plastid | 34.53 | 32.88 |
| TraesCS3D01G384800.1 | Wheat | cytosol, mitochondrion, nucleus, plasma membrane | 20.5 | 32.76 |
| Zm00001d048754_P001 | Maize | nucleus, plasma membrane, plastid | 34.53 | 32.65 |
| Zm00001d048752_P001 | Maize | nucleus, plasma membrane, plastid | 34.53 | 32.65 |
| TraesCS3B01G424000.1 | Wheat | cytosol | 24.1 | 32.52 |
| Zm00001d048757_P001 | Maize | nucleus, plasma membrane, plastid | 33.81 | 32.19 |
| Zm00001d048748_P001 | Maize | nucleus, plasma membrane, plastid | 33.81 | 32.08 |
| TraesCS7B01G235700.1 | Wheat | cytosol | 29.86 | 31.56 |
| TraesCS7A01G347500.1 | Wheat | cytosol | 29.86 | 31.32 |
| Os10t0124200-00 | Rice | cytosol | 33.09 | 31.19 |
| TraesCS7D01G331400.1 | Wheat | cytosol | 29.5 | 31.18 |
| EES10179 | Sorghum | plasma membrane, plastid | 31.3 | 30.96 |
| Os06t0138400-00 | Rice | nucleus, peroxisome, plastid | 41.73 | 30.93 |
| Zm00001d007654_P001 | Maize | nucleus, plasma membrane, plastid | 32.01 | 30.9 |
| TraesCS7A01G347600.1 | Wheat | cytosol | 29.14 | 30.68 |
| Os10t0128300-00 | Rice | plastid | 32.01 | 30.58 |
| Zm00001d002885_P001 | Maize | plastid | 34.53 | 30.09 |
| TraesCS3D01G406100.1 | Wheat | nucleus, plasma membrane, plastid | 30.58 | 30.04 |
| TraesCS3A01G411800.1 | Wheat | mitochondrion, plastid | 32.37 | 30.0 |
| KXG20050 | Sorghum | plastid | 28.78 | 29.74 |
| TraesCS6D01G318000.1 | Wheat | plastid | 29.86 | 29.33 |
| Os06t0503900-01 | Rice | cytosol, nucleus, plasma membrane | 28.78 | 28.47 |
| TraesCS4B01G071200.1 | Wheat | plastid | 29.5 | 27.24 |
| TraesCS3B01G444600.1 | Wheat | mitochondrion | 29.14 | 27.09 |
| TraesCS4A01G243900.1 | Wheat | plastid | 29.14 | 26.91 |
| TraesCS4A01G243700.1 | Wheat | plastid | 28.78 | 26.85 |
| TraesCS4D01G069900.1 | Wheat | plastid | 29.14 | 26.82 |
| TraesCS4B01G071000.1 | Wheat | plastid | 28.42 | 26.78 |
| TraesCS4A01G243800.1 | Wheat | plastid | 28.42 | 26.51 |
| TraesCS4B01G071100.1 | Wheat | plastid | 28.78 | 26.49 |
| EES09326 | Sorghum | mitochondrion, nucleus | 28.06 | 26.17 |
| OQU83919 | Sorghum | mitochondrion | 22.66 | 25.82 |
| TraesCS3B01G445400.1 | Wheat | plastid | 30.58 | 25.68 |
| TraesCS7A01G082100.1 | Wheat | nucleus | 39.57 | 25.17 |
| OQU83918 | Sorghum | cytosol, extracellular, nucleus | 16.91 | 25.0 |
| OQU76452 | Sorghum | plastid | 14.39 | 24.54 |
| Os07t0169800-00 | Rice | nucleus | 43.53 | 24.2 |
| KXG22837 | Sorghum | mitochondrion | 29.86 | 23.99 |
| KXG38897 | Sorghum | plastid | 28.78 | 23.46 |
| Zm00001d029981_P001 | Maize | plastid | 30.22 | 22.64 |
| Zm00001d031508_P001 | Maize | cytosol | 30.94 | 21.83 |
| OQU76454 | Sorghum | plastid | 15.83 | 21.67 |
| Zm00001d007893_P001 | Maize | nucleus | 37.05 | 20.64 |
| EER98038 | Sorghum | plastid | 40.65 | 19.62 |
| OQU76453 | Sorghum | plastid | 16.19 | 14.95 |
Protein Annotations
| EntrezGene:100253485 | wikigene:100253485 | MapMan:16.8.2.1.2.2 | Gene3D:3.30.420.10 | EMBL:AM460452 | ProteinID:CAN76920 |
| ProteinID:CAN76920.1 | ProteinID:CCB51617 | ProteinID:CCB51617.1 | UniProt:F6HHC1 | EMBL:FN595757 | GO:GO:0000932 |
| GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003824 | GO:GO:0004518 | GO:GO:0004535 | GO:GO:0005488 |
| GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 | GO:GO:0006139 | GO:GO:0006412 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009056 | GO:GO:0009058 | GO:GO:0009987 | GO:GO:0016787 |
| GO:GO:0017148 | GO:GO:0019538 | GO:GO:0030015 | GO:GO:0043928 | GO:GO:0090503 | InterPro:IPR036397 |
| EntrezGene:LOC100253485 | wikigene:LOC100253485 | PFAM:PF04857 | PANTHER:PTHR10797 | PANTHER:PTHR10797:SF3 | InterPro:RNaseH-like_sf |
| InterPro:RNaseH_sf | InterPro:RNase_CAF1 | SUPFAM:SSF53098 | TIGR:TC55261 | TIGR:TC62806 | UniParc:UPI0001985AD6 |
| ArrayExpress:VIT_06s0080g01090 | EnsemblPlantsGene:VIT_06s0080g01090 | EnsemblPlants:VIT_06s0080g01090.t01 | unigene:Vvi.1236 | RefSeq:XP_002271636 | RefSeq:XP_002271636.1 |
Description
No Description!
Coordinates
chr6:+:21224733..21225711
Molecular Weight (calculated)
31747.5 Da
IEP (calculated)
4.710
GRAVY (calculated)
-0.201
Length
278 amino acids
Sequence
(BLAST)
(BLAST)
001: MFSEDSDCNS KPVMIREVWA ENLESEFELI SDLIDQYPFI SMDTEFPGVV FRPSGGEQQF RLRRPSDHYR FLKSNVDALC LIQVGLTLSD ANGNLPDLGT
101: GNRFIWEFNF RDFDVARDAH APDSIELLSR QGIDFDRNRE EGVDSARFAE LMMSSGLVCN ESVSWVTFHS AYDFGYLVKI LTRRSLPSGL EEFLSILRVF
201: FGTKVYDVKH LMKFCASLYG GLDRVARTLE VDRAVGKCHQ AGSDSLLTWH AFQKIRDVYF EKDGTEKYAG VLYGLEVF
101: GNRFIWEFNF RDFDVARDAH APDSIELLSR QGIDFDRNRE EGVDSARFAE LMMSSGLVCN ESVSWVTFHS AYDFGYLVKI LTRRSLPSGL EEFLSILRVF
201: FGTKVYDVKH LMKFCASLYG GLDRVARTLE VDRAVGKCHQ AGSDSLLTWH AFQKIRDVYF EKDGTEKYAG VLYGLEVF
001: MAIIKPNRDL KPDGVTVVTR EVWAENLESE FELISEIIDD YPFISMDTEF PGVIFKSDLR FTNPDDLYTL LKANVDALSL IQVGLTLSDV NGNLPDLGDD
101: LHRGFIWEFN FRDFDVARDA HAPDSIELLR RQGIDFERNC RDGVESERFA ELMMSSGLVC NEEVSWVTFH SAYDFGYLMK ILTRRELPGA LGEFKRVMRV
201: LFGERVYDVK HMMKFCERRL FGGLDRVART LEVNRAVGKC HQAGSDSLLT WHAFQRMRDL YFVQDGPEKH AGVLYGLEVF
101: LHRGFIWEFN FRDFDVARDA HAPDSIELLR RQGIDFERNC RDGVESERFA ELMMSSGLVC NEEVSWVTFH SAYDFGYLMK ILTRRELPGA LGEFKRVMRV
201: LFGERVYDVK HMMKFCERRL FGGLDRVART LEVNRAVGKC HQAGSDSLLT WHAFQRMRDL YFVQDGPEKH AGVLYGLEVF
Arabidopsis Description
CAF1-9Probable CCR4-associated factor 1 homolog 9 [Source:UniProtKB/Swiss-Prot;Acc:Q9LXM2]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.