Subcellular Localization
min:
: max
Winner_takes_all: mitochondrion, plasma membrane, nucleus, cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- mitochondrion 2
- cytosol 1
- plasma membrane 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| TraesCS2A01G504600.1 | |
| TraesCS2D01G505300.1 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT3G44260.1 | TraesCS2A01G504600.1 | AT1G22920.1 | 21798944 |
| AT3G44260.1 | TraesCS2D01G505300.1 | AT1G22920.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS3B01G424000.1 | Wheat | cytosol | 78.74 | 66.5 |
| TraesCS3D01G406100.1 | Wheat | nucleus, plasma membrane, plastid | 89.08 | 54.77 |
| TraesCS6D01G318000.1 | Wheat | plastid | 62.07 | 38.16 |
| TraesCS4D01G069900.1 | Wheat | plastid | 63.22 | 36.42 |
| KXG20050 | Sorghum | plastid | 44.25 | 28.62 |
| CDX70991 | Canola | cytosol, nucleus, plastid | 20.11 | 27.56 |
| TraesCS7D01G331400.1 | Wheat | cytosol | 40.23 | 26.62 |
| KXG38897 | Sorghum | plastid | 50.0 | 25.51 |
| Zm00001d029981_P001 | Maize | plastid | 49.43 | 23.18 |
| Bra020179.1-P | Field mustard | nucleus | 35.06 | 22.59 |
| CDY35673 | Canola | nucleus | 34.48 | 22.22 |
| CDY09125 | Canola | nucleus | 33.91 | 21.85 |
| Bra035002.1-P | Field mustard | nucleus | 33.33 | 21.4 |
| CDY47299 | Canola | nucleus | 33.33 | 21.32 |
| AT5G22250.1 | Thale cress | cytosol | 33.91 | 21.22 |
| CDX98586 | Canola | nucleus | 34.48 | 21.2 |
| AT3G44260.1 | Thale cress | cytosol | 33.91 | 21.07 |
| Bra006616.1-P | Field mustard | cytosol | 34.48 | 21.05 |
| CDX88806 | Canola | cytosol | 34.48 | 21.05 |
| Bra002400.1-P | Field mustard | nucleus | 33.91 | 21.0 |
| CDX92371 | Canola | nucleus | 33.91 | 20.85 |
| VIT_06s0080g01090.t01 | Wine grape | nucleus | 32.76 | 20.5 |
| KRH25294 | Soybean | nucleus | 32.76 | 20.5 |
| CDY08688 | Canola | cytosol | 32.76 | 20.43 |
| KRH30376 | Soybean | nucleus | 33.33 | 20.42 |
| PGSC0003DMT400042215 | Potato | plastid | 32.18 | 19.65 |
| Solyc01g007840.2.1 | Tomato | plastid | 32.18 | 19.65 |
| TraesCS5D01G233200.1 | Wheat | cytosol | 31.03 | 19.35 |
| OQU76452 | Sorghum | plastid | 17.82 | 19.02 |
| TraesCS7D01G291400.1 | Wheat | nucleus | 31.61 | 18.71 |
| OQU76454 | Sorghum | plastid | 21.26 | 18.23 |
| TraesCS7D01G075800.1 | Wheat | nucleus | 27.01 | 18.22 |
| TraesCS6D01G341500.1 | Wheat | cytosol | 29.31 | 17.65 |
| KRH26669 | Soybean | endoplasmic reticulum, golgi | 31.03 | 17.48 |
| KRH22647 | Soybean | endoplasmic reticulum, vacuole | 31.03 | 17.31 |
| TraesCS2D01G597200.1 | Wheat | nucleus | 31.61 | 16.82 |
| GSMUA_AchrUn_... | Banana | mitochondrion | 24.71 | 16.73 |
| GSMUA_Achr8P18010_001 | Banana | mitochondrion | 24.71 | 16.6 |
| OQU76453 | Sorghum | plastid | 24.14 | 13.95 |
| TraesCS3D01G126800.1 | Wheat | plastid | 21.26 | 5.44 |
Protein Annotations
| EnsemblPlants:TraesCS3D01G384800.1 | EnsemblPlantsGene:TraesCS3D01G384800 | Gene3D:3.30.420.10 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0005488 |
| InterPro:IPR036397 | InterPro:RNaseH-like_sf | InterPro:RNaseH_sf | PANTHER:PTHR10797 | PANTHER:PTHR10797:SF7 | SEG:seg |
| SUPFAM:SSF53098 | MapMan:35.2 | : | : | : | : |
Description
No Description!
Coordinates
chr3D:+:500090625..500091552
Molecular Weight (calculated)
18759.9 Da
IEP (calculated)
7.458
GRAVY (calculated)
0.220
Length
174 amino acids
Sequence
(BLAST)
(BLAST)
001: MTVAQRYALM KANVDGLKPL QVGIAVCDHE GQQVAWEFNL CDFCRLADPH DQKALDYLAD RGVDLDMLGA LLMGSSLIGA GHGRPLSWIT YAGAYYAAYL
101: LKIVYDVATM AAGCPGMPVG LDCIAASLRI HPPWGSPRLA GAAGVRALLA FRIWKHGEFG GNVERFRGLL QGLQ
101: LKIVYDVATM AAGCPGMPVG LDCIAASLRI HPPWGSPRLA GAAGVRALLA FRIWKHGEFG GNVERFRGLL QGLQ
001: MIKSEADLSD VIVIRDVWAY NLESEFDLIR GIVEDYPFIS MDTEFPGVIY KADLDVLRRG NPNYLYNLLK SNVDALSLIQ VGLTLSDADG NLPDLGGQKN
101: RRYIWEFNFR DFDVERDPHA PDSIELLRRH GIDFERNRRE GVESERFAEL MMSSGLICNE SVSWVTFHSA YDFGYLVKIL TRRQLPVALR EFLGLLRAFF
201: GDRVYDVKHI MRFCEQRLYG GLDRVARSLE VNRAVGKCHQ AGSDSLLTWQ AFQRMRDLYF VEDGAEKHAG VLYGLEVF
101: RRYIWEFNFR DFDVERDPHA PDSIELLRRH GIDFERNRRE GVESERFAEL MMSSGLICNE SVSWVTFHSA YDFGYLVKIL TRRQLPVALR EFLGLLRAFF
201: GDRVYDVKHI MRFCEQRLYG GLDRVARSLE VNRAVGKCHQ AGSDSLLTWQ AFQRMRDLYF VEDGAEKHAG VLYGLEVF
Arabidopsis Description
CAF1-11Probable CCR4-associated factor 1 homolog 11 [Source:UniProtKB/Swiss-Prot;Acc:Q9FMS6]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.