Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- plastid 1
- nucleus 1
- mitochondrion 1
- cytosol 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| TraesCS2A01G504600.1 | |
| TraesCS2D01G505300.1 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT3G44260.1 | TraesCS2A01G504600.1 | AT1G22920.1 | 21798944 |
| AT3G44260.1 | TraesCS2D01G505300.1 | AT1G22920.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS3D01G384800.1 | Wheat | cytosol, mitochondrion, nucleus, plasma membrane | 66.5 | 78.74 |
| TraesCS3B01G444600.1 | Wheat | mitochondrion | 84.47 | 58.19 |
| TraesCS3B01G445400.1 | Wheat | plastid | 87.38 | 54.38 |
| TraesCS4B01G071200.1 | Wheat | plastid | 64.08 | 43.85 |
| TraesCS4B01G071000.1 | Wheat | plastid | 62.62 | 43.73 |
| TraesCS4B01G071100.1 | Wheat | plastid | 60.68 | 41.39 |
| KXG20050 | Sorghum | plastid | 42.23 | 32.34 |
| CDX70991 | Canola | cytosol, nucleus, plastid | 17.96 | 29.13 |
| KXG38897 | Sorghum | plastid | 48.06 | 29.03 |
| TraesCS7B01G235700.1 | Wheat | cytosol | 36.89 | 28.9 |
| Zm00001d029981_P001 | Maize | plastid | 46.6 | 25.88 |
| Bra020179.1-P | Field mustard | nucleus | 32.52 | 24.81 |
| AT3G44260.1 | Thale cress | cytosol | 33.5 | 24.64 |
| Bra035002.1-P | Field mustard | nucleus | 32.04 | 24.35 |
| CDY47299 | Canola | nucleus | 32.04 | 24.26 |
| VIT_06s0080g01090.t01 | Wine grape | nucleus | 32.52 | 24.1 |
| CDY35673 | Canola | nucleus | 31.55 | 24.07 |
| CDY08688 | Canola | cytosol | 32.52 | 24.01 |
| KRH25294 | Soybean | nucleus | 32.04 | 23.74 |
| CDY09125 | Canola | nucleus | 31.07 | 23.7 |
| KRH30376 | Soybean | nucleus | 32.04 | 23.24 |
| CDX88806 | Canola | cytosol | 32.04 | 23.16 |
| Bra006616.1-P | Field mustard | cytosol | 32.04 | 23.16 |
| AT5G22250.1 | Thale cress | cytosol | 31.07 | 23.02 |
| CDX98586 | Canola | nucleus | 31.55 | 22.97 |
| Bra002400.1-P | Field mustard | nucleus | 31.07 | 22.78 |
| PGSC0003DMT400042215 | Potato | plastid | 31.07 | 22.46 |
| Solyc01g007840.2.1 | Tomato | plastid | 31.07 | 22.46 |
| CDX92371 | Canola | nucleus | 30.58 | 22.26 |
| TraesCS5B01G224400.1 | Wheat | cytosol | 30.1 | 22.22 |
| OQU76452 | Sorghum | plastid | 17.48 | 22.09 |
| TraesCS6B01G391400.1 | Wheat | cytosol | 30.58 | 21.8 |
| KRH26669 | Soybean | endoplasmic reticulum, golgi | 31.55 | 21.04 |
| TraesCS7B01G198900.1 | Wheat | nucleus | 29.61 | 20.75 |
| KRH22647 | Soybean | endoplasmic reticulum, vacuole | 30.1 | 19.87 |
| TraesCS2B01G603600.1 | Wheat | cytosol | 31.07 | 19.69 |
| GSMUA_Achr8P18010_001 | Banana | mitochondrion | 24.27 | 19.3 |
| OQU76454 | Sorghum | plastid | 18.93 | 19.21 |
| GSMUA_AchrUn_... | Banana | mitochondrion | 23.79 | 19.07 |
| OQU76453 | Sorghum | plastid | 22.33 | 15.28 |
| TraesCS4B01G078100.1 | Wheat | cytosol, plastid | 25.73 | 5.62 |
Protein Annotations
| EnsemblPlants:TraesCS3B01G424000.1 | EnsemblPlantsGene:TraesCS3B01G424000 | Gene3D:3.30.420.10 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0005488 |
| InterPro:IPR036397 | InterPro:RNaseH-like_sf | InterPro:RNaseH_sf | PANTHER:PTHR10797 | PANTHER:PTHR10797:SF7 | SUPFAM:SSF53098 |
| MapMan:35.1 | : | : | : | : | : |
Description
No Description!
Coordinates
chr3B:+:661785863..661786483
Molecular Weight (calculated)
22375.0 Da
IEP (calculated)
6.944
GRAVY (calculated)
0.078
Length
206 amino acids
Sequence
(BLAST)
(BLAST)
001: MNATRPGLVH TAGQDQRYAL MKANVDGLKP LQVGIAVCDH QGQQVAWEFN LRDVCRLADA HDDKALDYLA ERGLDLDTLC NHSVDAYMLG ALSWITYAGA
101: YHVTYLLNIV TGGALLPHDV VGFIGAMQYY LGQQVYDVAT MAAGCPGMPV GLDRIAANLR IHPPWGSPRF AGAAGVRVLL AFRILKDGQF GGNVERFRGL
201: LQGLQH
101: YHVTYLLNIV TGGALLPHDV VGFIGAMQYY LGQQVYDVAT MAAGCPGMPV GLDRIAANLR IHPPWGSPRF AGAAGVRVLL AFRILKDGQF GGNVERFRGL
201: LQGLQH
001: MAIIKPNRDL KPDGVTVVTR EVWAENLESE FELISEIIDD YPFISMDTEF PGVIFKSDLR FTNPDDLYTL LKANVDALSL IQVGLTLSDV NGNLPDLGDD
101: LHRGFIWEFN FRDFDVARDA HAPDSIELLR RQGIDFERNC RDGVESERFA ELMMSSGLVC NEEVSWVTFH SAYDFGYLMK ILTRRELPGA LGEFKRVMRV
201: LFGERVYDVK HMMKFCERRL FGGLDRVART LEVNRAVGKC HQAGSDSLLT WHAFQRMRDL YFVQDGPEKH AGVLYGLEVF
101: LHRGFIWEFN FRDFDVARDA HAPDSIELLR RQGIDFERNC RDGVESERFA ELMMSSGLVC NEEVSWVTFH SAYDFGYLMK ILTRRELPGA LGEFKRVMRV
201: LFGERVYDVK HMMKFCERRL FGGLDRVART LEVNRAVGKC HQAGSDSLLT WHAFQRMRDL YFVQDGPEKH AGVLYGLEVF
Arabidopsis Description
CAF1-9Probable CCR4-associated factor 1 homolog 9 [Source:UniProtKB/Swiss-Prot;Acc:Q9LXM2]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.