Subcellular Localization
min:
: max
Winner_takes_all: mitochondrion
Predictor Summary:
Predictor Summary:
- plastid 2
- nucleus 1
- mitochondrion 4
- plasma membrane 1
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| TraesCS2A01G504600.1 | |
| TraesCS2D01G505300.1 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT3G44260.1 | TraesCS2A01G504600.1 | AT1G22920.1 | 21798944 |
| AT3G44260.1 | TraesCS2D01G505300.1 | AT1G22920.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS3D01G406100.1 | Wheat | nucleus, plasma membrane, plastid | 86.62 | 91.52 |
| TraesCS3A01G411800.1 | Wheat | mitochondrion, plastid | 87.63 | 87.33 |
| TraesCS3B01G424000.1 | Wheat | cytosol | 58.19 | 84.47 |
| TraesCS3B01G445400.1 | Wheat | plastid | 90.64 | 81.87 |
| TraesCS4B01G071200.1 | Wheat | plastid | 61.2 | 60.8 |
| TraesCS4B01G071000.1 | Wheat | plastid | 59.53 | 60.34 |
| TraesCS4B01G071100.1 | Wheat | plastid | 59.53 | 58.94 |
| KXG20050 | Sorghum | plastid | 38.13 | 42.38 |
| KXG38897 | Sorghum | plastid | 48.16 | 42.23 |
| Zm00001d029981_P001 | Maize | plastid | 46.49 | 37.47 |
| TraesCS7B01G235700.1 | Wheat | cytosol | 32.44 | 36.88 |
| CDX70991 | Canola | cytosol, nucleus, plastid | 14.72 | 34.65 |
| OQU76452 | Sorghum | plastid | 18.73 | 34.36 |
| Bra020179.1-P | Field mustard | nucleus | 28.09 | 31.11 |
| CDY09125 | Canola | nucleus | 27.42 | 30.37 |
| CDY35673 | Canola | nucleus | 27.42 | 30.37 |
| VIT_06s0080g01090.t01 | Wine grape | nucleus | 27.09 | 29.14 |
| KRH25294 | Soybean | nucleus | 27.09 | 29.14 |
| Bra035002.1-P | Field mustard | nucleus | 26.09 | 28.78 |
| AT5G22250.1 | Thale cress | cytosol | 26.76 | 28.78 |
| CDY47299 | Canola | nucleus | 26.09 | 28.68 |
| TraesCS5B01G224400.1 | Wheat | cytosol | 26.76 | 28.67 |
| OQU76454 | Sorghum | plastid | 19.4 | 28.57 |
| KRH30376 | Soybean | nucleus | 27.09 | 28.52 |
| Bra006616.1-P | Field mustard | cytosol | 27.09 | 28.42 |
| CDX88806 | Canola | cytosol | 27.09 | 28.42 |
| CDX98586 | Canola | nucleus | 26.76 | 28.27 |
| Bra002400.1-P | Field mustard | nucleus | 26.42 | 28.11 |
| Solyc01g007840.2.1 | Tomato | plastid | 26.76 | 28.07 |
| PGSC0003DMT400042215 | Potato | plastid | 26.76 | 28.07 |
| TraesCS7B01G198900.1 | Wheat | nucleus | 27.42 | 27.89 |
| AT3G44260.1 | Thale cress | cytosol | 26.09 | 27.86 |
| CDX92371 | Canola | nucleus | 26.09 | 27.56 |
| CDY08688 | Canola | cytosol | 25.42 | 27.24 |
| TraesCS6B01G391400.1 | Wheat | cytosol | 26.09 | 26.99 |
| GSMUA_AchrUn_... | Banana | mitochondrion | 23.08 | 26.85 |
| GSMUA_Achr8P18010_001 | Banana | mitochondrion | 23.08 | 26.64 |
| TraesCS2B01G603600.1 | Wheat | cytosol | 28.43 | 26.15 |
| KRH26669 | Soybean | endoplasmic reticulum, golgi | 26.09 | 25.24 |
| KRH22647 | Soybean | endoplasmic reticulum, vacuole | 25.75 | 24.68 |
| OQU76453 | Sorghum | plastid | 22.41 | 22.26 |
| TraesCS4B01G078100.1 | Wheat | cytosol, plastid | 22.74 | 7.21 |
Protein Annotations
| EnsemblPlants:TraesCS3B01G444600.1 | EnsemblPlantsGene:TraesCS3B01G444600 | Gene3D:3.30.420.10 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0005488 |
| InterPro:IPR036397 | InterPro:RNaseH-like_sf | InterPro:RNaseH_sf | InterPro:RNase_CAF1 | PANTHER:PTHR10797 | PANTHER:PTHR10797:SF7 |
| PFAM:PF04857 | SEG:seg | SUPFAM:SSF53098 | MapMan:35.1 | : | : |
Description
No Description!
Coordinates
chr3B:-:684619549..684621008
Molecular Weight (calculated)
32520.3 Da
IEP (calculated)
7.453
GRAVY (calculated)
0.086
Length
299 amino acids
Sequence
(BLAST)
(BLAST)
001: MFAVYPPPPP RFKFNRMFPV QAQLPPFAYH AAPLPPVQPQ LAVQVRPVWA GSFNEEWAYL QSFAACARYV AIDVHYPGLV HAAGQDLSSL TVEHRYALMK
101: ADVDGLKPLQ VGIAVCDHLG QQVAWEFNLR DFCRPADPHN DKALDYHAAR GLDLDTLRNH GVDAYMLGAL LMGSGLIGAG HGRPLSWITH AGAYHVAYLL
201: KIVTGGAPLP HDVAGFLGAV QYYLGQHVYD VATMAADCEG MPVGLDCIAA SLRIHPPWGS PRLAGAAGVR ALLAFRILKD GQFGGNVERF RGLFQGLQH
101: ADVDGLKPLQ VGIAVCDHLG QQVAWEFNLR DFCRPADPHN DKALDYHAAR GLDLDTLRNH GVDAYMLGAL LMGSGLIGAG HGRPLSWITH AGAYHVAYLL
201: KIVTGGAPLP HDVAGFLGAV QYYLGQHVYD VATMAADCEG MPVGLDCIAA SLRIHPPWGS PRLAGAAGVR ALLAFRILKD GQFGGNVERF RGLFQGLQH
001: MIKSEADLSD VIVIRDVWAY NLESEFDLIR GIVEDYPFIS MDTEFPGVIY KADLDVLRRG NPNYLYNLLK SNVDALSLIQ VGLTLSDADG NLPDLGGQKN
101: RRYIWEFNFR DFDVERDPHA PDSIELLRRH GIDFERNRRE GVESERFAEL MMSSGLICNE SVSWVTFHSA YDFGYLVKIL TRRQLPVALR EFLGLLRAFF
201: GDRVYDVKHI MRFCEQRLYG GLDRVARSLE VNRAVGKCHQ AGSDSLLTWQ AFQRMRDLYF VEDGAEKHAG VLYGLEVF
101: RRYIWEFNFR DFDVERDPHA PDSIELLRRH GIDFERNRRE GVESERFAEL MMSSGLICNE SVSWVTFHSA YDFGYLVKIL TRRQLPVALR EFLGLLRAFF
201: GDRVYDVKHI MRFCEQRLYG GLDRVARSLE VNRAVGKCHQ AGSDSLLTWQ AFQRMRDLYF VEDGAEKHAG VLYGLEVF
Arabidopsis Description
CAF1-11Probable CCR4-associated factor 1 homolog 11 [Source:UniProtKB/Swiss-Prot;Acc:Q9FMS6]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.