Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 2
- mitochondrion 2
- plastid 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| TraesCS2A01G504600.1 | |
| TraesCS2D01G505300.1 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT3G44260.1 | TraesCS2A01G504600.1 | AT1G22920.1 | 21798944 |
| AT3G44260.1 | TraesCS2D01G505300.1 | AT1G22920.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS2A01G583000.1 | Wheat | nucleus | 93.58 | 94.44 |
| TraesCS2B01G603600.1 | Wheat | cytosol | 93.27 | 93.85 |
| HORVU2Hr1G123480.1 | Barley | nucleus | 83.79 | 84.31 |
| Zm00001d026657_P001 | Maize | cytosol | 55.66 | 60.87 |
| CDX70991 | Canola | cytosol, nucleus, plastid | 23.24 | 59.84 |
| Zm00001d001774_P001 | Maize | nucleus | 52.91 | 58.25 |
| Os04t0684900-02 | Rice | nucleus | 55.05 | 54.71 |
| GSMUA_Achr9P29700_001 | Banana | cytosol | 35.47 | 54.46 |
| EES11684 | Sorghum | nucleus | 54.43 | 53.13 |
| GSMUA_Achr6P19450_001 | Banana | cytosol | 39.45 | 52.87 |
| GSMUA_Achr6P19460_001 | Banana | cytosol | 27.22 | 51.45 |
| Bra020179.1-P | Field mustard | nucleus | 41.59 | 50.37 |
| AT5G22250.1 | Thale cress | cytosol | 42.81 | 50.36 |
| CDY09125 | Canola | nucleus | 41.28 | 50.0 |
| VIT_06s0080g01090.t01 | Wine grape | nucleus | 42.51 | 50.0 |
| CDY35673 | Canola | nucleus | 40.98 | 49.63 |
| KRH25294 | Soybean | nucleus | 41.28 | 48.56 |
| CDX92371 | Canola | nucleus | 41.9 | 48.41 |
| Bra002400.1-P | Field mustard | nucleus | 41.59 | 48.4 |
| CDX98586 | Canola | nucleus | 41.59 | 48.06 |
| KRH30376 | Soybean | nucleus | 41.59 | 47.89 |
| CDY47299 | Canola | nucleus | 39.76 | 47.79 |
| Bra035002.1-P | Field mustard | nucleus | 39.45 | 47.6 |
| CDX88806 | Canola | cytosol | 40.67 | 46.67 |
| AT3G44260.1 | Thale cress | cytosol | 39.76 | 46.43 |
| Bra006616.1-P | Field mustard | cytosol | 40.37 | 46.32 |
| CDY08688 | Canola | cytosol | 39.45 | 46.24 |
| KRH26669 | Soybean | endoplasmic reticulum, golgi | 42.81 | 45.31 |
| PGSC0003DMT400042215 | Potato | plastid | 39.45 | 45.26 |
| TraesCS5D01G233200.1 | Wheat | cytosol | 38.53 | 45.16 |
| Solyc01g007840.2.1 | Tomato | plastid | 38.23 | 43.86 |
| KRH22647 | Soybean | endoplasmic reticulum, vacuole | 40.98 | 42.95 |
| TraesCS6D01G341500.1 | Wheat | cytosol | 37.92 | 42.91 |
| TraesCS7D01G291400.1 | Wheat | nucleus | 37.92 | 42.18 |
| TraesCS7D01G075800.1 | Wheat | nucleus | 28.44 | 36.05 |
| TraesCS3D01G384800.1 | Wheat | cytosol, mitochondrion, nucleus, plasma membrane | 16.82 | 31.61 |
| TraesCS3D01G406100.1 | Wheat | nucleus, plasma membrane, plastid | 26.91 | 31.1 |
| TraesCS6D01G318000.1 | Wheat | plastid | 26.91 | 31.1 |
| TraesCS4D01G069900.1 | Wheat | plastid | 28.13 | 30.46 |
| TraesCS7D01G331400.1 | Wheat | cytosol | 23.85 | 29.66 |
| TraesCS3D01G126800.1 | Wheat | plastid | 25.69 | 12.35 |
Protein Annotations
| EnsemblPlants:TraesCS2D01G597200.1 | EnsemblPlantsGene:TraesCS2D01G597200 | Gene3D:3.30.420.10 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0005488 |
| InterPro:IPR036397 | InterPro:RNaseH-like_sf | InterPro:RNaseH_sf | InterPro:RNase_CAF1 | PANTHER:PTHR10797 | PANTHER:PTHR10797:SF3 |
| PFAM:PF04857 | SEG:seg | SUPFAM:SSF53098 | MapMan:35.1 | : | : |
Description
No Description!
Coordinates
chr2D:-:649705631..649706614
Molecular Weight (calculated)
34902.6 Da
IEP (calculated)
9.395
GRAVY (calculated)
-0.117
Length
327 amino acids
Sequence
(BLAST)
(BLAST)
001: MKLQTEAAAA GGQGRLMIRQ VWANNVESEF QAIRQVAERF PYVSMDTEFP GVIHCPSKHH ATLTPSERYA ALKANVDALH LIQVGLAFAA SPDAPPAVAF
101: EINLREFDPR VHRHNPSSVA LLAGHGLDFA RQRRQGVDAR VFAALLMSSG LVCSGSGSGA PTWVTFHSAY DFGYLVKLLM GRKLPRTLPE FLGLVRVFFG
201: DQVYDARHVM GSCAGLYGGL DALAAQLGVE RAAGMSHQAG SDAALTWDVF RRIREVYFAG NTRQGQGVGN FAGVLYGLEL ELDLAAAPAP AADNGNGNGN
301: RNNKNKCGSG NGAGGRGNNR RAVAALR
101: EINLREFDPR VHRHNPSSVA LLAGHGLDFA RQRRQGVDAR VFAALLMSSG LVCSGSGSGA PTWVTFHSAY DFGYLVKLLM GRKLPRTLPE FLGLVRVFFG
201: DQVYDARHVM GSCAGLYGGL DALAAQLGVE RAAGMSHQAG SDAALTWDVF RRIREVYFAG NTRQGQGVGN FAGVLYGLEL ELDLAAAPAP AADNGNGNGN
301: RNNKNKCGSG NGAGGRGNNR RAVAALR
001: MSLFLKDDSI QIREVWNDNL QEEMDLIRDV VDDFPYVAMD TEFPGIVVRP VGTFKSNADY HYETLKTNVN ILKMIQLGLT FSNEQGNLPT CGTDKYCIWQ
101: FNFREFDLDS DIFALDSIEL LKQSGIDLAK NTLDGIDSKR FAELLMSSGI VLNENVHWVT FHSGYDFGYL LKLLTCQNLP DSQTDFFKLI NVYFPTVYDI
201: KHLMKFCNSL HGGLNKLAEL LEVERVGICH QAGSDSLLTS CTFRKLKENF FVGPLHKYSG VLYGLGVENG QVAI
101: FNFREFDLDS DIFALDSIEL LKQSGIDLAK NTLDGIDSKR FAELLMSSGI VLNENVHWVT FHSGYDFGYL LKLLTCQNLP DSQTDFFKLI NVYFPTVYDI
201: KHLMKFCNSL HGGLNKLAEL LEVERVGICH QAGSDSLLTS CTFRKLKENF FVGPLHKYSG VLYGLGVENG QVAI
Arabidopsis Description
Polynucleotidyl transferase, ribonuclease H-like superfamily protein [Source:UniProtKB/TrEMBL;Acc:F4HU15]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.