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Sorghum
Subcellular Localization
min:
: max

 
Winner_takes_all: nucleus

Predictor Summary:
  • cytosol 3
  • nucleus 3
  • mitochondrion 1
  • plastid 1
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
Zm00001d050433_P001 Maize nucleus 85.31 87.14
Zm00001d032158_P002 Maize plastid 94.76 68.09
Os08t0440300-03 Rice cytosol 63.99 63.54
TraesCS7A01G297000.1 Wheat nucleus 65.03 63.27
EER96736 Sorghum nucleus 61.54 63.08
TraesCS7D01G291400.1 Wheat nucleus 64.34 62.59
TraesCS7B01G198900.1 Wheat nucleus 64.34 62.59
GSMUA_Achr3P04600_001 Banana nucleus 53.15 62.04
HORVU7Hr1G067520.3 Barley nucleus 65.03 62.0
GSMUA_Achr9P13270_001 Banana cytosol 58.74 61.09
KRH52356 Soybean nucleus 56.99 59.71
KRH61689 Soybean nucleus 56.99 59.71
PGSC0003DMT400036620 Potato nucleus 56.64 59.12
VIT_09s0070g00060.t01 Wine grape nucleus 56.29 58.76
KRH47360 Soybean nucleus 56.64 58.48
Bra008439.1-P Field mustard nucleus 55.94 58.39
Solyc03g117030.1.1 Tomato nucleus 55.94 58.39
CDY63973 Canola nucleus 55.94 58.39
CDY53227 Canola nucleus 55.94 58.39
Bra035152.1-P Field mustard cytosol 55.94 58.18
CDX87343 Canola cytosol 55.94 58.18
PGSC0003DMT400058833 Potato cytosol 55.59 58.03
PGSC0003DMT400073328 Potato nucleus 55.24 57.88
VIT_04s0008g05850.t01 Wine grape nucleus 55.24 57.88
CDY39943 Canola cytosol 55.59 57.82
EES05957 Sorghum nucleus 57.69 57.29
CDY64914 Canola nucleus 55.24 57.25
Bra005614.1-P Field mustard nucleus 55.24 57.25
AT2G32070.1 Thale cress nucleus 54.9 57.09
AT5G10960.1 Thale cress nucleus 55.24 57.04
KRH44539 Soybean cytosol 55.94 56.94
CDY12234 Canola nucleus 54.9 56.88
Solyc06g068410.2.1 Tomato nucleus 50.0 56.75
Solyc11g045130.1.1 Tomato cytosol 54.2 56.57
CDX70376 Canola nucleus 54.55 56.52
VIT_11s0037g00100.t01 Wine grape nucleus 53.15 56.3
CDX69796 Canola nucleus 54.55 56.12
AT1G80780.3 Thale cress cytosol 55.94 55.94
CDX78405 Canola nucleus 54.2 55.76
Bra006083.1-P Field mustard nucleus 54.2 55.76
Bra009001.1-P Field mustard nucleus 54.55 55.71
CDX97069 Canola nucleus 53.85 55.0
CDY35049 Canola nucleus 51.4 53.26
AT1G15920.2 Thale cress nucleus 53.15 53.15
KRH28796 Soybean nucleus 17.83 52.04
Bra026093.1-P Field mustard nucleus 51.4 49.16
EES11684 Sorghum nucleus 39.51 33.73
CDY12236 Canola cytosol, extracellular 47.2 32.77
CDY33367 Canola cytosol, extracellular 51.4 32.38
EER87806 Sorghum cytosol, nucleus, plasma membrane 35.31 31.96
EES10179 Sorghum plasma membrane, plastid 28.67 29.18
KXG20050 Sorghum plastid 24.48 26.02
OQU83918 Sorghum cytosol, extracellular, nucleus 16.08 24.47
OQU83919 Sorghum mitochondrion 20.63 24.18
EES09326 Sorghum mitochondrion, nucleus 24.48 23.49
OQU76452 Sorghum plastid 13.29 23.31
KXG22837 Sorghum mitochondrion 25.87 21.39
KXG38897 Sorghum plastid 24.13 20.23
OQU76454 Sorghum plastid 13.29 18.72
EER98038 Sorghum plastid 32.52 16.15
OQU76453 Sorghum plastid 15.73 14.95
Protein Annotations
Gene3D:3.30.420.10MapMan:35.1EntrezGene:8077842UniProt:C5YLK4EnsemblPlants:EES13910ProteinID:EES13910
ProteinID:EES13910.1GO:GO:0000932GO:GO:0003674GO:GO:0003676GO:GO:0003824GO:GO:0004518
GO:GO:0004535GO:GO:0005488GO:GO:0005575GO:GO:0005622GO:GO:0005623GO:GO:0005737
GO:GO:0006139GO:GO:0006412GO:GO:0008150GO:GO:0008152GO:GO:0009056GO:GO:0009058
GO:GO:0009987GO:GO:0016787GO:GO:0017148GO:GO:0019538GO:GO:0030015GO:GO:0043928
GO:GO:0090503InterPro:IPR036397PFAM:PF04857PANTHER:PTHR10797PANTHER:PTHR10797:SF15InterPro:RNaseH-like_sf
InterPro:RNaseH_sfInterPro:RNase_CAF1EnsemblPlantsGene:SORBI_3007G140500SUPFAM:SSF53098unigene:Sbi.14701UniParc:UPI0001A87961
RefSeq:XP_002444415.1SEG:seg::::
Description
hypothetical protein
Coordinates
chr7:+:56956346..56959499
Molecular Weight (calculated)
31397.7 Da
IEP (calculated)
4.643
GRAVY (calculated)
0.020
Length
286 amino acids
Sequence
(BLAST)
001: MAASPPAAEG PDAVEIREVW AGNLEEEFAV IRAVVDAYPY VAMDTEFPGF VVKPSAEYRF TCDRNYAALE GNVNVLKLIQ LGLTLSNGAG ALPPCGTGGR
101: GCIWQFNFRG FDPHTDPSSN DSIDLLRRSG IDFDRFAAEG VDSTRFAELM MSSGIVLNDD VQWVTFHSGH DFGYLLRLLT GREMPNTLDE FLKLTKTFFP
201: VLYDIKHLMK FCGGGLYGGL SKLGELLKVE RVGIGHQAGS DSLLTLQCFM KLKQLYLNES VKLYDGVLFG LIPGEVEIKP AAPPIE
Best Arabidopsis Sequence Match ( AT1G80780.1 )
(BLAST)
001: MSLFLKDDSI QIREVWNDNL QEEMDLIRDV VDDFPYVAMD TEFPGIVVRP VGTFKSNADY HYETLKTNVN ILKMIQLGLT FSNEQGNLPT CGTDKYCIWQ
101: FNFREFDLDS DIFALDSIEL LKQSGIDLAK NTLDGIDSKR FAELLMSSGI VLNENVHWVT FHSGYDFGYL LKLLTCQNLP DSQTDFFKLI NVYFPTVYDI
201: KHLMKFCNSL HGGLNKLAEL LEVERVGICH QAGSDSLLTS CTFRKLKENF FVGPLHKYSG VLYGLGVENG QVAI
Arabidopsis Description
Polynucleotidyl transferase, ribonuclease H-like superfamily protein [Source:UniProtKB/TrEMBL;Acc:F4HU15]
SUBAcon: [nucleus]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.