Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- cytosol 2
- nucleus 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| AT2G32070.1 | Thale cress | nucleus | 62.94 | 65.45 |
| VIT_09s0070g00060.t01 | Wine grape | nucleus | 62.24 | 64.96 |
| PGSC0003DMT400036620 | Potato | nucleus | 61.19 | 63.87 |
| GSMUA_Achr9P13270_001 | Banana | cytosol | 61.19 | 63.64 |
| Solyc03g117030.1.1 | Tomato | nucleus | 60.84 | 63.5 |
| KRH47360 | Soybean | nucleus | 61.19 | 63.18 |
| CDY35049 | Canola | nucleus | 60.49 | 62.68 |
| GSMUA_Achr3P04600_001 | Banana | nucleus | 53.5 | 62.45 |
| KRH44539 | Soybean | cytosol | 61.19 | 62.28 |
| KRH52356 | Soybean | nucleus | 59.44 | 62.27 |
| PGSC0003DMT400058833 | Potato | cytosol | 59.44 | 62.04 |
| KRH61689 | Soybean | nucleus | 59.09 | 61.9 |
| AT1G80780.3 | Thale cress | cytosol | 61.54 | 61.54 |
| VIT_11s0037g00100.t01 | Wine grape | nucleus | 58.04 | 61.48 |
| Solyc11g045130.1.1 | Tomato | cytosol | 58.74 | 61.31 |
| PGSC0003DMT400073328 | Potato | nucleus | 58.39 | 61.17 |
| VIT_04s0008g05850.t01 | Wine grape | nucleus | 56.99 | 59.71 |
| AT5G10960.1 | Thale cress | nucleus | 57.69 | 59.57 |
| Solyc06g068410.2.1 | Tomato | nucleus | 51.75 | 58.73 |
| Bra026093.1-P | Field mustard | nucleus | 60.84 | 58.19 |
| EES05957 | Sorghum | nucleus | 58.04 | 57.64 |
| Zm00001d052031_P001 | Maize | cytosol | 57.69 | 57.49 |
| TraesCS5D01G233200.1 | Wheat | cytosol | 55.94 | 57.35 |
| TraesCS5B01G224400.1 | Wheat | cytosol | 55.94 | 57.35 |
| TraesCS5A01G225900.1 | Wheat | cytosol | 55.94 | 57.35 |
| EER96736 | Sorghum | nucleus | 55.94 | 57.35 |
| TraesCS6D01G341500.1 | Wheat | cytosol | 57.69 | 57.09 |
| HORVU6Hr1G085410.1 | Barley | cytosol | 57.69 | 57.09 |
| TraesCS6B01G391400.1 | Wheat | cytosol | 57.69 | 57.09 |
| TraesCS6A01G358700.1 | Wheat | cytosol | 57.69 | 57.09 |
| Os09t0416800-01 | Rice | cytosol | 55.59 | 56.79 |
| Zm00001d020486_P001 | Maize | extracellular | 55.24 | 56.63 |
| Os02t0796300-01 | Rice | cytosol | 57.69 | 55.93 |
| GSMUA_Achr4P04220_001 | Banana | nucleus | 52.1 | 55.39 |
| GSMUA_Achr4P04150_001 | Banana | cytosol | 52.1 | 55.39 |
| GSMUA_Achr4P11450_001 | Banana | cytosol | 51.4 | 54.65 |
| TraesCS7B01G198900.1 | Wheat | nucleus | 55.94 | 54.42 |
| TraesCS7D01G291400.1 | Wheat | nucleus | 55.94 | 54.42 |
| GSMUA_Achr9P22440_001 | Banana | cytosol | 47.9 | 54.37 |
| GSMUA_Achr2P05120_001 | Banana | cytosol | 48.6 | 54.09 |
| TraesCS7A01G297000.1 | Wheat | nucleus | 55.59 | 54.08 |
| EES13910 | Sorghum | nucleus | 53.15 | 53.15 |
| Os08t0440300-03 | Rice | cytosol | 53.5 | 53.12 |
| HORVU7Hr1G067520.3 | Barley | nucleus | 55.24 | 52.67 |
| KRH28796 | Soybean | nucleus | 17.83 | 52.04 |
| Zm00001d050433_P001 | Maize | nucleus | 49.3 | 50.36 |
| AT3G44260.1 | Thale cress | cytosol | 46.5 | 47.5 |
| AT5G22250.1 | Thale cress | cytosol | 45.1 | 46.4 |
| GSMUA_Achr1P10040_001 | Banana | nucleus | 42.66 | 43.73 |
| Zm00001d018378_P001 | Maize | nucleus | 11.89 | 43.04 |
| CDY33367 | Canola | cytosol, extracellular | 61.89 | 38.99 |
| Zm00001d032158_P002 | Maize | plastid | 53.5 | 38.44 |
| AT3G44240.1 | Thale cress | cytosol | 28.67 | 34.31 |
| AT1G61470.1 | Thale cress | nucleus | 29.02 | 29.86 |
| AT1G27890.1 | Thale cress | cytosol | 29.37 | 27.81 |
| AT1G06450.1 | Thale cress | cytosol | 34.62 | 27.5 |
| AT1G27820.1 | Thale cress | cytosol | 28.67 | 26.45 |
Protein Annotations
| Gene3D:3.30.420.10 | MapMan:35.1 | EntrezGene:838162 | ProteinID:AAF18489.1 | ProteinID:AEE29383.1 | ProteinID:AEE29384.1 |
| EMBL:AK317215 | ArrayExpress:AT1G15920 | EnsemblPlantsGene:AT1G15920 | RefSeq:AT1G15920 | TAIR:AT1G15920 | RefSeq:AT1G15920-TAIR-G |
| EnsemblPlants:AT1G15920.2 | TAIR:AT1G15920.2 | EMBL:AY080754 | EMBL:AY114040 | Unigene:At.41908 | GO:GO:0000932 |
| GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003723 | GO:GO:0003824 | GO:GO:0004518 | GO:GO:0004527 |
| GO:GO:0004535 | GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 |
| GO:GO:0005737 | GO:GO:0006139 | GO:GO:0006351 | GO:GO:0006355 | GO:GO:0006412 | GO:GO:0008150 |
| GO:GO:0008152 | GO:GO:0009056 | GO:GO:0009058 | GO:GO:0009987 | GO:GO:0016787 | GO:GO:0017148 |
| GO:GO:0019538 | GO:GO:0030015 | GO:GO:0043928 | GO:GO:0046872 | GO:GO:0090305 | GO:GO:0090503 |
| InterPro:IPR036397 | RefSeq:NP_173044.1 | RefSeq:NP_973838.1 | PFAM:PF04857 | PO:PO:0000013 | PO:PO:0000037 |
| PO:PO:0000084 | PO:PO:0000230 | PO:PO:0000293 | PO:PO:0001016 | PO:PO:0001017 | PO:PO:0001054 |
| PO:PO:0001078 | PO:PO:0001081 | PO:PO:0001185 | PO:PO:0004507 | PO:PO:0007064 | PO:PO:0007095 |
| PO:PO:0007098 | PO:PO:0007103 | PO:PO:0007115 | PO:PO:0007123 | PO:PO:0007611 | PO:PO:0007616 |
| PO:PO:0008019 | PO:PO:0009005 | PO:PO:0009006 | PO:PO:0009009 | PO:PO:0009010 | PO:PO:0009025 |
| PO:PO:0009029 | PO:PO:0009030 | PO:PO:0009031 | PO:PO:0009032 | PO:PO:0009046 | PO:PO:0009047 |
| PO:PO:0009052 | PO:PO:0020030 | PO:PO:0020038 | PO:PO:0020100 | PO:PO:0020137 | PO:PO:0025022 |
| PO:PO:0025195 | PO:PO:0025281 | PANTHER:PTHR10797 | PANTHER:PTHR10797:SF0 | UniProt:Q9S9P2 | InterPro:RNaseH-like_sf |
| InterPro:RNaseH_sf | InterPro:RNase_CAF1 | SUPFAM:SSF53098 | UniParc:UPI000009FE19 | : | : |
Description
CAF1-2Probable CCR4-associated factor 1 homolog 2 [Source:UniProtKB/Swiss-Prot;Acc:Q9S9P2]
Coordinates
chr1:+:5469255..5471149
Molecular Weight (calculated)
32637.1 Da
IEP (calculated)
4.513
GRAVY (calculated)
-0.170
Length
286 amino acids
Sequence
(BLAST)
(BLAST)
001: MSQAPNPEEE DDTIEIREVW NHNLEQEMAL IEQSIDDFPY VAMDTEFPGI VCKTVTANPN PNPYSIHYEY NYDTLKANVN MLKLIQLGLT LSDEKGNLPT
101: CGTNKQCIWQ FNFREFNVIS DMFALDSIEL LRKSAIDLEK NNECGVDAKR FAELLMGSGV VLNDKIHWVT FHCGYDFGYL LKLLSGKELP EEISDFFDQM
201: EKFFPVVYDI KYLMGFCTNL YGGLEKIAEL LGVKRVGISH QAGSDSLLTL RTFIKMKEFF FTGSLLKYSG FLFGLDNPRL LTGSKN
101: CGTNKQCIWQ FNFREFNVIS DMFALDSIEL LRKSAIDLEK NNECGVDAKR FAELLMGSGV VLNDKIHWVT FHCGYDFGYL LKLLSGKELP EEISDFFDQM
201: EKFFPVVYDI KYLMGFCTNL YGGLEKIAEL LGVKRVGISH QAGSDSLLTL RTFIKMKEFF FTGSLLKYSG FLFGLDNPRL LTGSKN
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.