Factsheet for AT1G06450.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 3
nucleus 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
BaCelLo:	cytosol
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra032421.1-P	Field mustard	cytosol, mitochondrion, nucleus	66.94	65.67
CDY09974	Canola	cytosol, mitochondrion, nucleus	66.67	65.4
CDY06214	Canola	cytosol, mitochondrion, nucleus	66.39	65.12
CDY09972	Canola	cytosol, mitochondrion, nucleus	66.94	63.93
AT3G44240.1	Thale cress	cytosol	29.17	43.93
AT1G61470.1	Thale cress	nucleus	31.94	41.37
AT1G27890.1	Thale cress	cytosol	31.67	37.75
AT1G27820.1	Thale cress	cytosol	30.83	35.81
AT2G32070.1	Thale cress	nucleus	26.94	35.27
AT1G15920.2	Thale cress	nucleus	27.5	34.62
AT5G10960.1	Thale cress	nucleus	26.39	34.3
AT1G80780.3	Thale cress	cytosol	26.94	33.92
AT3G44260.1	Thale cress	cytosol	26.11	33.57
AT5G22250.1	Thale cress	cytosol	25.56	33.09
GSMUA_Achr4P30930_001	Banana	cytosol	15.56	28.72
GSMUA_Achr4P30910_001	Banana	nucleus	26.11	27.81

Protein Annotations

Gene3D:3.30.420.10	MapMan:35.1	EntrezGene:837157	ProteinID:AAF24820.1	ProteinID:AEE27988.1	EMBL:AK118108
ArrayExpress:AT1G06450	EnsemblPlantsGene:AT1G06450	RefSeq:AT1G06450	TAIR:AT1G06450	RefSeq:AT1G06450-TAIR-G	EnsemblPlants:AT1G06450.1
TAIR:AT1G06450.1	Unigene:At.66805	EMBL:BT005529	GO:GO:0000932	GO:GO:0003674	GO:GO:0003676
GO:GO:0003723	GO:GO:0003824	GO:GO:0004518	GO:GO:0004527	GO:GO:0004535	GO:GO:0005488
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005737	GO:GO:0006139
GO:GO:0006351	GO:GO:0006355	GO:GO:0006412	GO:GO:0008150	GO:GO:0008152	GO:GO:0009056
GO:GO:0009058	GO:GO:0009987	GO:GO:0016787	GO:GO:0017148	GO:GO:0019538	GO:GO:0030015
GO:GO:0043928	GO:GO:0046872	GO:GO:0090305	GO:GO:0090503	InterPro:IPR036397	RefSeq:NP_172133.1
PFAM:PF04857	PO:PO:0000013	PO:PO:0000037	PO:PO:0000084	PO:PO:0000230	PO:PO:0000293
PO:PO:0001017	PO:PO:0001054	PO:PO:0001078	PO:PO:0001081	PO:PO:0001185	PO:PO:0004507
PO:PO:0007064	PO:PO:0007095	PO:PO:0007098	PO:PO:0007103	PO:PO:0007115	PO:PO:0007123
PO:PO:0007611	PO:PO:0007616	PO:PO:0008019	PO:PO:0009005	PO:PO:0009006	PO:PO:0009009
PO:PO:0009010	PO:PO:0009025	PO:PO:0009029	PO:PO:0009030	PO:PO:0009031	PO:PO:0009032
PO:PO:0009046	PO:PO:0009047	PO:PO:0009052	PO:PO:0020030	PO:PO:0020038	PO:PO:0020100
PO:PO:0020137	PO:PO:0025022	PO:PO:0025195	PO:PO:0025281	PANTHER:PTHR10797	PANTHER:PTHR10797:SF16
UniProt:Q9SHJ0	InterPro:RNaseH-like_sf	InterPro:RNaseH_sf	InterPro:RNase_CAF1	SUPFAM:SSF53098	UniParc:UPI000000C690
SEG:seg	:	:	:	:	:

Description

CAF1-1Probable CCR4-associated factor 1 homolog 1 [Source:UniProtKB/Swiss-Prot;Acc:Q9SHJ0]

Coordinates

chr1:+:1965840..1967219

Molecular Weight (calculated)

40480.2 Da

IEP (calculated)

6.283

GRAVY (calculated)

-0.180

Length

360 amino acids

Sequence
(BLAST)

001: MNEIHQPLAR RVWRSNVDEE MARMAECLKR FPLIAFDTEY PGIIFRTYFD SSSDECYRAM KGNVENTKLI QCGFTLFNAK GEIGGVWEIN FSNFGDPSDT
101: RNELSIEFLR RHGLDLQKIR DEGVDMFGYG FFPKLMTVFR SQKHVEFVTF QGAYDFAYFL SILNHGKLPE THGEFATEVV KVFGQVYDTK VMAGFCEGLG
201: EHLGLSKLAQ LLQITRVGRA HHAGSDSLMT ALVFIKLKHV YEDSRFARGL IYGIGKSNLV AAPAPAPVPE PTLPLMCQQN VASYPVFHNG YVQNYEQPQL
301: VSYDPSGAPW AFCNATGTYV QLTHLPASTF AYPSQTPSAT VDYLGPVPNY YNNNACYVVE

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.