Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- mitochondrion 1
- cytosol 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| AT1G27890.1 | Thale cress | cytosol | 91.29 | 93.71 |
| AT1G61470.1 | Thale cress | nucleus | 74.19 | 82.73 |
| AT3G44240.1 | Thale cress | cytosol | 37.74 | 48.95 |
| CDY26919 | Canola | cytosol | 48.39 | 46.58 |
| CDX73277 | Canola | cytosol | 48.39 | 46.44 |
| CDY22569 | Canola | cytosol | 51.94 | 35.62 |
| CDY12276 | Canola | cytosol | 40.0 | 35.03 |
| GSMUA_Achr4P30930_001 | Banana | cytosol | 20.32 | 32.31 |
| AT5G10960.1 | Thale cress | nucleus | 27.74 | 31.05 |
| AT1G06450.1 | Thale cress | cytosol | 35.81 | 30.83 |
| AT2G32070.1 | Thale cress | nucleus | 26.77 | 30.18 |
| AT5G22250.1 | Thale cress | cytosol | 26.77 | 29.86 |
| AT1G15920.2 | Thale cress | nucleus | 26.45 | 28.67 |
| AT1G80780.3 | Thale cress | cytosol | 26.13 | 28.32 |
| AT3G44260.1 | Thale cress | cytosol | 25.48 | 28.21 |
| GSMUA_Achr4P30910_001 | Banana | nucleus | 30.32 | 27.81 |
| Bra023214.1-P | Field mustard | cytosol | 39.35 | 22.1 |
Protein Annotations
| Gene3D:3.30.420.10 | MapMan:35.1 | EntrezGene:839676 | ProteinID:AAF24955.1 | ProteinID:AAG50574.1 | ProteinID:AEE30880.1 |
| ArrayExpress:AT1G27820 | EnsemblPlantsGene:AT1G27820 | RefSeq:AT1G27820 | TAIR:AT1G27820 | RefSeq:AT1G27820-TAIR-G | EnsemblPlants:AT1G27820.1 |
| TAIR:AT1G27820.1 | Unigene:At.51794 | GO:GO:0000932 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003723 |
| GO:GO:0003824 | GO:GO:0004518 | GO:GO:0004527 | GO:GO:0004535 | GO:GO:0005488 | GO:GO:0005575 |
| GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0005737 | GO:GO:0006139 | GO:GO:0006351 |
| GO:GO:0006355 | GO:GO:0006412 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009056 | GO:GO:0009058 |
| GO:GO:0009987 | GO:GO:0016787 | GO:GO:0017148 | GO:GO:0019538 | GO:GO:0030015 | GO:GO:0043928 |
| GO:GO:0046872 | GO:GO:0090305 | GO:GO:0090503 | InterPro:IPR036397 | RefSeq:NP_174103.1 | PFAM:PF04857 |
| PO:PO:0000084 | PANTHER:PTHR10797 | PANTHER:PTHR10797:SF16 | UniProt:Q9SFX6 | InterPro:RNaseH-like_sf | InterPro:RNaseH_sf |
| InterPro:RNase_CAF1 | SUPFAM:SSF53098 | UniParc:UPI00000A8E31 | SEG:seg | : | : |
Description
CAF1-3Putative CCR4-associated factor 1 homolog 3 [Source:UniProtKB/Swiss-Prot;Acc:Q9SFX6]
Coordinates
chr1:+:9691628..9692560
Molecular Weight (calculated)
35925.1 Da
IEP (calculated)
8.145
GRAVY (calculated)
-0.512
Length
310 amino acids
Sequence
(BLAST)
(BLAST)
001: MKQISSGEVW RWNKEVEMNS IRDCLKHCSS IAIDTEFPGC LKETPMDASE EIRYRDMKFN VDNTHLIQLG FTLFDRRGFA KTWEINLSDF DEHKCFKNDK
101: SIAFLKSNGL NLDKIREEGI GIDEFFRDFS QILTEKDGKI TWVNFQGSYD NAYLVKGLTG GKPLPETKEE FHETVQQLLG KFVFDVKKIA ESCSGLSSQF
201: GLQRIADVLQ MKRVGKAHHA GSDSELTARV FTKLTFDLLN SRKQSVRRVD HQQFQLEQQQ HQQFMMTRCY IPIPMPIPRP RPVMFAAHHQ NPYFGGGYFR
301: MPVQGMNYVL
101: SIAFLKSNGL NLDKIREEGI GIDEFFRDFS QILTEKDGKI TWVNFQGSYD NAYLVKGLTG GKPLPETKEE FHETVQQLLG KFVFDVKKIA ESCSGLSSQF
201: GLQRIADVLQ MKRVGKAHHA GSDSELTARV FTKLTFDLLN SRKQSVRRVD HQQFQLEQQQ HQQFMMTRCY IPIPMPIPRP RPVMFAAHHQ NPYFGGGYFR
301: MPVQGMNYVL
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.