Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- cytosol 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY12276 | Canola | cytosol | 56.42 | 72.03 |
| AT1G27890.1 | Thale cress | cytosol | 35.84 | 53.64 |
| CDY26919 | Canola | cytosol | 38.05 | 53.42 |
| CDX73277 | Canola | cytosol | 38.05 | 53.25 |
| AT1G27820.1 | Thale cress | cytosol | 35.62 | 51.94 |
| AT1G61470.1 | Thale cress | nucleus | 31.64 | 51.44 |
| Bra023214.1-P | Field mustard | cytosol | 59.29 | 48.55 |
| CDY09125 | Canola | nucleus | 20.13 | 33.7 |
| CDY35673 | Canola | nucleus | 20.13 | 33.7 |
| CDY47299 | Canola | nucleus | 19.91 | 33.09 |
| CDX88806 | Canola | cytosol | 20.8 | 32.98 |
| CDX69796 | Canola | nucleus | 19.91 | 32.37 |
| CDX70991 | Canola | cytosol, nucleus, plastid | 9.07 | 32.28 |
| CDX97069 | Canola | nucleus | 19.91 | 32.14 |
| CDY64914 | Canola | nucleus | 19.47 | 31.88 |
| CDY08688 | Canola | cytosol | 19.47 | 31.54 |
| CDY12234 | Canola | nucleus | 19.25 | 31.52 |
| CDX70376 | Canola | nucleus | 19.25 | 31.52 |
| CDX98586 | Canola | nucleus | 19.69 | 31.45 |
| CDX92371 | Canola | nucleus | 19.47 | 31.1 |
| CDX78405 | Canola | nucleus | 19.03 | 30.94 |
| CDY63973 | Canola | nucleus | 18.36 | 30.29 |
| CDY53227 | Canola | nucleus | 18.36 | 30.29 |
| CDY35049 | Canola | nucleus | 18.36 | 30.07 |
| CDY06214 | Canola | cytosol, mitochondrion, nucleus | 24.34 | 29.97 |
| CDY39943 | Canola | cytosol | 18.14 | 29.82 |
| CDX87343 | Canola | cytosol | 18.14 | 29.82 |
| CDY09974 | Canola | cytosol, mitochondrion, nucleus | 24.11 | 29.7 |
| GSMUA_Achr4P30930_001 | Banana | cytosol | 12.61 | 29.23 |
| CDY09972 | Canola | cytosol, mitochondrion, nucleus | 24.34 | 29.18 |
| GSMUA_Achr4P30910_001 | Banana | nucleus | 20.8 | 27.81 |
| CDY12236 | Canola | cytosol, extracellular | 19.47 | 21.36 |
| CDY33367 | Canola | cytosol, extracellular | 19.69 | 19.6 |
| CDX96828 | Canola | cytosol | 0.66 | 2.5 |
| CDY70980 | Canola | cytosol | 0.66 | 2.5 |
| CDX83963 | Canola | cytosol | 0.66 | 2.5 |
Protein Annotations
| KEGG:00340+3.5.4.19 | Gene3D:3.30.420.10 | MapMan:4.1.1.2.3 | GO:A0A078GB55 | UniProt:A0A078GB55 | EnsemblPlants:CDY22569 |
| ProteinID:CDY22569 | ProteinID:CDY22569.1 | ncoils:Coil | GO:GO:0000105 | GO:GO:0003674 | GO:GO:0003676 |
| GO:GO:0003824 | GO:GO:0004635 | GO:GO:0005488 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 |
| GO:GO:0009987 | GO:GO:0016787 | EnsemblPlantsGene:GSBRNA2T00019179001 | InterPro:IPR036397 | InterPro:IPR038019 | PFAM:PD002610 |
| PFAM:PF01502 | PFAM:PF04857 | InterPro:PRib_AMP_CycHydrolase_dom | InterPro:PRib_AMP_CycHydrolase_sf | PANTHER:PTHR10797 | PANTHER:PTHR10797:SF16 |
| InterPro:RNaseH-like_sf | InterPro:RNaseH_sf | InterPro:RNase_CAF1 | SUPFAM:SSF141734 | SUPFAM:SSF53098 | UniPathway:UPA00031 |
| UniParc:UPI0004EDC2B0 | SEG:seg | : | : | : | : |
Description
BnaC05g24070DBnaC05g24070D protein [Source:UniProtKB/TrEMBL;Acc:A0A078GB55]
Coordinates
chrLK032133:-:91891..95447
Molecular Weight (calculated)
52175.6 Da
IEP (calculated)
7.328
GRAVY (calculated)
-0.528
Length
452 amino acids
Sequence
(BLAST)
(BLAST)
001: MSNPKPREIF FTNMEEEMKL IKKVLKTCEF IAMDTEFPGC LKETPIGATD ETRYKNLKFN VERTKPIQLG FTLFERDRSI GGTWEVNFKD FDARTDACNE
101: KSIEFLRRNG LNFKKIRQEG VGMEEFFKEF GQILKDVDKK LKWVSFDGSY DLAYLVQGLT GRKPLPETLE AFNKTVEETL GLTFDVKKIV VDCKGVSARY
201: GLQRIADNLH IKRVGDAHHA GSDSELTARV FTDLIFSISK EQKREREEEK QDEEQRMKRA MHIMHEAEEA FVMERRGYEK VQPRCGYLPV LHPPPRPVVY
301: HPYPPQFAGY FVQPQRHIHP LLPAQLHSKS LLVPAQLLYS SDCYISDSLL DRIKWDDKEL AVTITQTDIK IKQKSNLDNH ECLSSCLCKE QRENKSQILL
401: VIKHKSKSQS IVIHIFLNVY IDCDRDSVFG TPDGPTCHTG AETCYYTSVS IN
101: KSIEFLRRNG LNFKKIRQEG VGMEEFFKEF GQILKDVDKK LKWVSFDGSY DLAYLVQGLT GRKPLPETLE AFNKTVEETL GLTFDVKKIV VDCKGVSARY
201: GLQRIADNLH IKRVGDAHHA GSDSELTARV FTDLIFSISK EQKREREEEK QDEEQRMKRA MHIMHEAEEA FVMERRGYEK VQPRCGYLPV LHPPPRPVVY
301: HPYPPQFAGY FVQPQRHIHP LLPAQLHSKS LLVPAQLLYS SDCYISDSLL DRIKWDDKEL AVTITQTDIK IKQKSNLDNH ECLSSCLCKE QRENKSQILL
401: VIKHKSKSQS IVIHIFLNVY IDCDRDSVFG TPDGPTCHTG AETCYYTSVS IN
001: MKQISSGEVW RWNKEVEMNS IRDCLKHCSS IAIDTEFPGC LKETPMDASE EIRYRDMKFN VDNTHLIQLG FTLFDRRGFA KTWEINLSDF DEHKCFKNDK
101: SIAFLKSNGL NLDKIREEGI GIDEFFRDFS QILTEKDGKI TWVNFQGSYD NAYLVKGLTG GKPLPETKEE FHETVQQLLG KFVFDVKKIA ESCSGLSSQF
201: GLQRIADVLQ MKRVGKAHHA GSDSELTARV FTKLTFDLLN SRKQSVRRVD HQQFQLEQQQ HQQFMMTRCY IPIPMPIPRP RPVMFAAHHQ NPYFGGGYFR
301: MPVQGMNYVL
101: SIAFLKSNGL NLDKIREEGI GIDEFFRDFS QILTEKDGKI TWVNFQGSYD NAYLVKGLTG GKPLPETKEE FHETVQQLLG KFVFDVKKIA ESCSGLSSQF
201: GLQRIADVLQ MKRVGKAHHA GSDSELTARV FTKLTFDLLN SRKQSVRRVD HQQFQLEQQQ HQQFMMTRCY IPIPMPIPRP RPVMFAAHHQ NPYFGGGYFR
301: MPVQGMNYVL
Arabidopsis Description
CAF1-3Putative CCR4-associated factor 1 homolog 3 [Source:UniProtKB/Swiss-Prot;Acc:Q9SFX6]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.