CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1
cytosol 3
mitochondrion 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, secretory
BaCelLo:	secretory
MultiLoc:	cytosol
PProwler:	mitochondrion
TargetP:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX96828	Canola	cytosol	99.17	99.17
CDY70980	Canola	cytosol	97.5	97.5
CDY12236	Canola	cytosol, extracellular	96.67	28.16
CDY33367	Canola	cytosol, extracellular	99.17	26.21
CDY63973	Canola	nucleus	2.5	1.09
CDY53227	Canola	nucleus	1.67	0.73
CDX87343	Canola	cytosol	1.67	0.73
CDY39943	Canola	cytosol	1.67	0.73
CDX70376	Canola	nucleus	1.67	0.72
CDY64914	Canola	nucleus	1.67	0.72
CDY12234	Canola	nucleus	1.67	0.72
CDX78405	Canola	nucleus	1.67	0.72
CDY22569	Canola	cytosol	2.5	0.66
TraesCS3D01G126800.1	Wheat	plastid	2.5	0.44
CDY35049	Canola	nucleus	0.83	0.36
CDX69796	Canola	nucleus	0.83	0.36
CDX97069	Canola	nucleus	0.83	0.36
CDY12276	Canola	cytosol	0.83	0.28
CDY06214	Canola	cytosol, mitochondrion, nucleus	0.83	0.27
CDY09974	Canola	cytosol, mitochondrion, nucleus	0.83	0.27
CDY09972	Canola	cytosol, mitochondrion, nucleus	0.83	0.27
TraesCS4B01G078100.1	Wheat	cytosol, plastid	1.67	0.21
CDX92371	Canola	nucleus	0.0	0.0
CDY35673	Canola	nucleus	0.0	0.0
CDX88806	Canola	cytosol	0.0	0.0
CDY47299	Canola	nucleus	0.0	0.0
CDY26919	Canola	cytosol	0.0	0.0
CDX73277	Canola	cytosol	0.0	0.0
CDX70991	Canola	cytosol, nucleus, plastid	0.0	0.0
CDX98586	Canola	nucleus	0.0	0.0
TraesCS3A01G447900.1	Wheat	cytoskeleton, cytosol, nucleus	0.0	0.0
CDY09125	Canola	nucleus	0.0	0.0
CDY08688	Canola	cytosol	0.0	0.0

Protein Annotations

MapMan:17.1.3.1.13	Gene3D:3.30.1330.30	GO:A0A078D9E2	EnsemblPlants:CDX83963	ProteinID:CDX83963	ProteinID:CDX83963.1
GO:GO:0003674	GO:GO:0003735	GO:GO:0005198	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0005840	GO:GO:0006412	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009987	GO:GO:0019538	EnsemblPlantsGene:GSBRNA2T00139745001	InterPro:IPR029064	InterPro:L30e-like	PFAM:PF01248
PRINTS:PR00972	ScanProsite:PS01189	PANTHER:PTHR11843	PANTHER:PTHR11843:SF3	InterPro:Ribosomal_L7Ae/L30e/S12e/Gad45	InterPro:Ribosomal_S12e
SUPFAM:SSF55315	UniParc:UPI0004EE59E2	:	:	:	:

Description

BnaC08g16820D

Coordinates

chrLK031834:-:1456614..1457825

Molecular Weight (calculated)

12994.9 Da

IEP (calculated)

7.814

GRAVY (calculated)

0.014

Length

120 amino acids

Sequence
(BLAST)

001: MDLLTALELT LRKARAHGGV VRGLHESAKL IEKRVAQLCV LAEDCNQPDY VKLVKALCAD HNINLLTVPS AKALGEWAGL CKIDSEGNAR KVVGCSCLVV
101: KDYGEDTTAL NIVKKHIESN

Best Arabidopsis Sequence Match ( AT1G15930.1 )
(BLAST)

001: MSGDEAAPVV VPPPVAEPAA IPEDMDLMTA LELTLRKARA YGGVVRGLHE CAKLIEKRVA QLVVLAEDCN QPDYVKLVKA LCADHEVRLL TVPSAKTLGE
101: WAGLCKIDSE GNARKVVGCS CLVVKDFGEE TTALSIVNKH IASQ

Arabidopsis Description

RPS12A40S ribosomal protein S12-1 [Source:UniProtKB/Swiss-Prot;Acc:Q9S9P1]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.