Subcellular Localization
min:
: max
Winner_takes_all: extracellular, cytosol
Predictor Summary:
Predictor Summary:
- cytosol 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
extracellular:
28052459
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX96828 | Canola | cytosol | 26.43 | 100.0 |
| CDX83963 | Canola | cytosol | 26.21 | 99.17 |
| CDY70980 | Canola | cytosol | 25.99 | 98.33 |
| CDY35049 | Canola | nucleus | 56.61 | 93.12 |
| CDY12236 | Canola | cytosol, extracellular | 61.45 | 67.72 |
| AT1G15920.2 | Thale cress | nucleus | 38.99 | 61.89 |
| CDY63973 | Canola | nucleus | 37.22 | 61.68 |
| CDY53227 | Canola | nucleus | 37.0 | 61.31 |
| CDX87343 | Canola | cytosol | 36.78 | 60.73 |
| CDY39943 | Canola | cytosol | 36.78 | 60.73 |
| CDY64914 | Canola | nucleus | 36.78 | 60.51 |
| GSMUA_Achr3P04600_001 | Banana | nucleus | 32.6 | 60.41 |
| CDY12234 | Canola | nucleus | 36.56 | 60.14 |
| VIT_09s0070g00060.t01 | Wine grape | nucleus | 36.12 | 59.85 |
| PGSC0003DMT400036620 | Potato | nucleus | 35.9 | 59.49 |
| Solyc03g117030.1.1 | Tomato | nucleus | 35.68 | 59.12 |
| KRH61689 | Soybean | nucleus | 34.8 | 57.88 |
| KRH47360 | Soybean | nucleus | 35.24 | 57.76 |
| KRH52356 | Soybean | nucleus | 34.36 | 57.14 |
| PGSC0003DMT400073328 | Potato | nucleus | 34.36 | 57.14 |
| TraesCS5A01G225900.1 | Wheat | cytosol | 35.02 | 56.99 |
| TraesCS5D01G233200.1 | Wheat | cytosol | 35.02 | 56.99 |
| TraesCS5B01G224400.1 | Wheat | cytosol | 35.02 | 56.99 |
| KRH44539 | Soybean | cytosol | 35.24 | 56.94 |
| CDX70376 | Canola | nucleus | 34.58 | 56.88 |
| GSMUA_Achr9P13270_001 | Banana | cytosol | 34.36 | 56.73 |
| PGSC0003DMT400058833 | Potato | cytosol | 34.14 | 56.57 |
| Solyc11g045130.1.1 | Tomato | cytosol | 34.14 | 56.57 |
| VIT_11s0037g00100.t01 | Wine grape | nucleus | 33.48 | 56.3 |
| CDX78405 | Canola | nucleus | 34.36 | 56.12 |
| VIT_04s0008g05850.t01 | Wine grape | nucleus | 33.48 | 55.68 |
| Os09t0416800-01 | Rice | cytosol | 33.92 | 55.0 |
| EER96736 | Sorghum | nucleus | 33.48 | 54.48 |
| Zm00001d020486_P001 | Maize | extracellular | 33.48 | 54.48 |
| CDX97069 | Canola | nucleus | 33.48 | 54.29 |
| EES05957 | Sorghum | nucleus | 34.36 | 54.17 |
| CDX69796 | Canola | nucleus | 32.82 | 53.6 |
| Solyc06g068410.2.1 | Tomato | nucleus | 29.74 | 53.57 |
| TraesCS6A01G358700.1 | Wheat | cytosol | 33.92 | 53.29 |
| TraesCS6B01G391400.1 | Wheat | cytosol | 33.92 | 53.29 |
| TraesCS6D01G341500.1 | Wheat | cytosol | 33.92 | 53.29 |
| HORVU6Hr1G085410.1 | Barley | cytosol | 33.92 | 53.29 |
| GSMUA_Achr4P04150_001 | Banana | cytosol | 31.28 | 52.79 |
| GSMUA_Achr9P22440_001 | Banana | cytosol | 29.3 | 52.78 |
| Os02t0796300-01 | Rice | cytosol | 34.14 | 52.54 |
| GSMUA_Achr4P04220_001 | Banana | nucleus | 31.06 | 52.42 |
| Zm00001d052031_P001 | Maize | cytosol | 33.04 | 52.26 |
| CDX70991 | Canola | cytosol, nucleus, plastid | 14.54 | 51.97 |
| GSMUA_Achr4P11450_001 | Banana | cytosol | 30.62 | 51.67 |
| EES13910 | Sorghum | nucleus | 32.38 | 51.4 |
| Os08t0440300-03 | Rice | cytosol | 32.38 | 51.04 |
| TraesCS7B01G198900.1 | Wheat | nucleus | 32.82 | 50.68 |
| TraesCS7D01G291400.1 | Wheat | nucleus | 32.82 | 50.68 |
| CDY09125 | Canola | nucleus | 29.96 | 50.37 |
| CDY35673 | Canola | nucleus | 29.96 | 50.37 |
| Zm00001d050433_P001 | Maize | nucleus | 31.06 | 50.36 |
| TraesCS7A01G297000.1 | Wheat | nucleus | 32.6 | 50.34 |
| GSMUA_Achr2P05120_001 | Banana | cytosol | 28.19 | 49.81 |
| CDY47299 | Canola | nucleus | 29.74 | 49.63 |
| CDX98586 | Canola | nucleus | 30.84 | 49.47 |
| CDX92371 | Canola | nucleus | 30.62 | 49.12 |
| CDY08688 | Canola | cytosol | 30.18 | 49.1 |
| HORVU7Hr1G067520.3 | Barley | nucleus | 32.38 | 49.0 |
| CDX88806 | Canola | cytosol | 29.74 | 47.37 |
| KRH28796 | Soybean | nucleus | 9.91 | 45.92 |
| Zm00001d018378_P001 | Maize | nucleus | 7.27 | 41.77 |
| GSMUA_Achr1P10040_001 | Banana | nucleus | 24.01 | 39.07 |
| Zm00001d032158_P002 | Maize | plastid | 32.16 | 36.68 |
| CDY26919 | Canola | cytosol | 20.26 | 28.57 |
| CDX73277 | Canola | cytosol | 20.26 | 28.48 |
| CDY09974 | Canola | cytosol, mitochondrion, nucleus | 19.82 | 24.52 |
| CDY06214 | Canola | cytosol, mitochondrion, nucleus | 19.6 | 24.25 |
| CDY09972 | Canola | cytosol, mitochondrion, nucleus | 20.04 | 24.14 |
| CDY12276 | Canola | cytosol | 15.86 | 20.34 |
| CDY22569 | Canola | cytosol | 19.6 | 19.69 |
Protein Annotations
| MapMan:17.1.3.1.13 | Gene3D:3.30.1330.30 | Gene3D:3.30.420.10 | GO:A0A078H7G9 | UniProt:A0A078H7G9 | EnsemblPlants:CDY33367 |
| ProteinID:CDY33367 | ProteinID:CDY33367.1 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003735 | GO:GO:0005198 |
| GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 | GO:GO:0005840 |
| GO:GO:0006412 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | GO:GO:0019538 |
| GO:GO:0030529 | EnsemblPlantsGene:GSBRNA2T00054212001 | InterPro:IPR029064 | InterPro:IPR036397 | InterPro:L30e-like | PFAM:PF01248 |
| PFAM:PF04857 | PRINTS:PR00972 | ScanProsite:PS01189 | PANTHER:PTHR10797 | PANTHER:PTHR10797:SF0 | InterPro:RNaseH-like_sf |
| InterPro:RNaseH_sf | InterPro:RNase_CAF1 | InterPro:Ribosomal_L7Ae/L30e/S12e/Gad45 | InterPro:Ribosomal_S12e | SUPFAM:SSF53098 | SUPFAM:SSF55315 |
| UniParc:UPI0004EEECC2 | SEG:seg | : | : | : | : |
Description
BnaC05g12160D40S ribosomal protein S12 [Source:UniProtKB/TrEMBL;Acc:A0A078H7G9]
Coordinates
chrLK032312:-:278832..281194
Molecular Weight (calculated)
51162.8 Da
IEP (calculated)
6.660
GRAVY (calculated)
-0.118
Length
454 amino acids
Sequence
(BLAST)
(BLAST)
001: MSMVTKQDDA IEIRNVWNEN LDHEMSLISQ AINYFPYVAM DTEFPGTVCK KVTTEANPRR DDSTCYESLK TNVNMLNMIQ LGLTLSDDQG NLPTLGTNKR
101: RQCVWQFNFR EFNLRTDMYA PDSIELLRRS GIDFDWNNRL GVESKRFADL LMGSGVVLNE EIQWVTFHCG YDFGYLLRLL TGRNLPDKQS EFLYLVNMFF
201: PRVFDIKHMI GFCHDLFGGL SSLAERLEVE RVGVSHQAGS DSLLTARVFR TMKETRFAGR SLDMYCGVLY GLGTITRTSV YFPVFKLIFK ETPCRGKLLL
301: RCGYAAFLNL RNHDEAAPVV VPPVAEPAAI IPEDMDLLTA LELTLRKARA HGGVVRGLHE SAKLIEKRVA QLCVLAEDCN QPDYVKLVKA LCADHNINLL
401: TVPSAKTLGE WAGLCKIDSE GNARKVVGCS CLVVKDYGED TTALNIVKKH IESN
101: RQCVWQFNFR EFNLRTDMYA PDSIELLRRS GIDFDWNNRL GVESKRFADL LMGSGVVLNE EIQWVTFHCG YDFGYLLRLL TGRNLPDKQS EFLYLVNMFF
201: PRVFDIKHMI GFCHDLFGGL SSLAERLEVE RVGVSHQAGS DSLLTARVFR TMKETRFAGR SLDMYCGVLY GLGTITRTSV YFPVFKLIFK ETPCRGKLLL
301: RCGYAAFLNL RNHDEAAPVV VPPVAEPAAI IPEDMDLLTA LELTLRKARA HGGVVRGLHE SAKLIEKRVA QLCVLAEDCN QPDYVKLVKA LCADHNINLL
401: TVPSAKTLGE WAGLCKIDSE GNARKVVGCS CLVVKDYGED TTALNIVKKH IESN
001: MSQAPNPEEE DDTIEIREVW NHNLEQEMAL IEQSIDDFPY VAMDTEFPGI VCKTVTANPN PNPYSIHYEY NYDTLKANVN MLKLIQLGLT LSDEKGNLPT
101: CGTNKQCIWQ FNFREFNVIS DMFALDSIEL LRKSAIDLEK NNECGVDAKR FAELLMGSGV VLNDKIHWVT FHCGYDFGYL LKLLSGKELP EEISDFFDQM
201: EKFFPVVYDI KYLMGFCTNL YGGLEKIAEL LGVKRVGISH QAGSDSLLTL RTFIKMKEFF FTGSLLKYSG FLFGLDNPRL LTGSKN
101: CGTNKQCIWQ FNFREFNVIS DMFALDSIEL LRKSAIDLEK NNECGVDAKR FAELLMGSGV VLNDKIHWVT FHCGYDFGYL LKLLSGKELP EEISDFFDQM
201: EKFFPVVYDI KYLMGFCTNL YGGLEKIAEL LGVKRVGISH QAGSDSLLTL RTFIKMKEFF FTGSLLKYSG FLFGLDNPRL LTGSKN
Arabidopsis Description
CAF1-2Probable CCR4-associated factor 1 homolog 2 [Source:UniProtKB/Swiss-Prot;Acc:Q9S9P2]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.