Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 2
- mitochondrion 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KRH28796 | Soybean | nucleus | 41.77 | 33.67 |
| Zm00001d052031_P001 | Maize | cytosol | 62.03 | 17.07 |
| Zm00001d020486_P001 | Maize | extracellular | 58.23 | 16.49 |
| KRH61689 | Soybean | nucleus | 55.7 | 16.12 |
| KRH52356 | Soybean | nucleus | 55.7 | 16.12 |
| GSMUA_Achr3P04600_001 | Banana | nucleus | 49.37 | 15.92 |
| Solyc06g068410.2.1 | Tomato | nucleus | 50.63 | 15.87 |
| VIT_09s0070g00060.t01 | Wine grape | nucleus | 54.43 | 15.69 |
| GSMUA_Achr9P13270_001 | Banana | cytosol | 54.43 | 15.64 |
| Bra005614.1-P | Field mustard | nucleus | 54.43 | 15.58 |
| CDY64914 | Canola | nucleus | 54.43 | 15.58 |
| VIT_04s0008g05850.t01 | Wine grape | nucleus | 53.16 | 15.38 |
| PGSC0003DMT400058833 | Potato | cytosol | 53.16 | 15.33 |
| CDY12234 | Canola | nucleus | 53.16 | 15.22 |
| PGSC0003DMT400073328 | Potato | nucleus | 51.9 | 15.02 |
| Solyc03g117030.1.1 | Tomato | nucleus | 51.9 | 14.96 |
| PGSC0003DMT400036620 | Potato | nucleus | 51.9 | 14.96 |
| KRH47360 | Soybean | nucleus | 51.9 | 14.8 |
| Solyc11g045130.1.1 | Tomato | cytosol | 50.63 | 14.6 |
| KRH44539 | Soybean | cytosol | 51.9 | 14.59 |
| AT2G32070.1 | Thale cress | nucleus | 50.63 | 14.55 |
| Zm00001d050433_P001 | Maize | nucleus | 49.37 | 13.93 |
| CDX69796 | Canola | nucleus | 48.1 | 13.67 |
| CDX97069 | Canola | nucleus | 48.1 | 13.57 |
| Bra009001.1-P | Field mustard | nucleus | 48.1 | 13.57 |
| Bra008439.1-P | Field mustard | nucleus | 46.84 | 13.5 |
| CDY53227 | Canola | nucleus | 46.84 | 13.5 |
| CDY63973 | Canola | nucleus | 46.84 | 13.5 |
| CDY39943 | Canola | cytosol | 46.84 | 13.45 |
| Bra035152.1-P | Field mustard | cytosol | 46.84 | 13.45 |
| CDX87343 | Canola | cytosol | 46.84 | 13.45 |
| CDX70376 | Canola | nucleus | 46.84 | 13.41 |
| Bra006083.1-P | Field mustard | nucleus | 46.84 | 13.31 |
| CDX78405 | Canola | nucleus | 46.84 | 13.31 |
| AT1G80780.3 | Thale cress | cytosol | 48.1 | 13.29 |
| AT5G10960.1 | Thale cress | nucleus | 44.3 | 12.64 |
| CDY35049 | Canola | nucleus | 41.77 | 11.96 |
| AT1G15920.2 | Thale cress | nucleus | 43.04 | 11.89 |
| VIT_11s0037g00100.t01 | Wine grape | nucleus | 40.51 | 11.85 |
| Bra026093.1-P | Field mustard | nucleus | 41.77 | 11.04 |
| Zm00001d032158_P002 | Maize | plastid | 50.63 | 10.05 |
| Zm00001d026657_P001 | Maize | cytosol | 36.71 | 9.7 |
| Zm00001d001774_P001 | Maize | nucleus | 35.44 | 9.43 |
| Zm00001d007662_P001 | Maize | extracellular, nucleus, plastid | 13.92 | 8.46 |
| Zm00001d007664_P001 | Maize | extracellular, nucleus, plastid | 13.92 | 8.46 |
| Zm00001d007669_P001 | Maize | extracellular, nucleus, plastid | 13.92 | 8.46 |
| Zm00001d007666_P001 | Maize | extracellular, nucleus, plastid | 13.92 | 8.03 |
| CDY12236 | Canola | cytosol, extracellular | 40.51 | 7.77 |
| CDY33367 | Canola | cytosol, extracellular | 41.77 | 7.27 |
| Zm00001d002885_P001 | Maize | plastid | 27.85 | 6.9 |
| Zm00001d048757_P001 | Maize | nucleus, plasma membrane, plastid | 25.32 | 6.85 |
| Zm00001d048746_P001 | Maize | nucleus, plasma membrane, plastid | 25.32 | 6.85 |
| Zm00001d048748_P001 | Maize | nucleus, plasma membrane, plastid | 25.32 | 6.83 |
| Zm00001d048752_P001 | Maize | nucleus, plasma membrane, plastid | 25.32 | 6.8 |
| Zm00001d048754_P001 | Maize | nucleus, plasma membrane, plastid | 25.32 | 6.8 |
| Zm00001d007654_P001 | Maize | nucleus, plasma membrane, plastid | 21.52 | 5.9 |
| Zm00001d031508_P001 | Maize | cytosol | 27.85 | 5.58 |
| Zm00001d029981_P001 | Maize | plastid | 25.32 | 5.39 |
| Zm00001d007893_P001 | Maize | nucleus | 31.65 | 5.01 |
Protein Annotations
| EnsemblPlants:Zm00001d018378_P001 | EnsemblPlants:Zm00001d018378_T001 | EnsemblPlantsGene:Zm00001d018378 | Gene3D:3.30.420.10 | GO:GO:0003674 | GO:GO:0003676 |
| GO:GO:0005488 | InterPro:IPR036397 | InterPro:RNaseH-like_sf | InterPro:RNaseH_sf | PANTHER:PTHR10797 | PANTHER:PTHR10797:SF33 |
| ProteinID:AQK75772.1 | SUPFAM:SSF53098 | UniParc:UPI0008430AFA | UniProt:A0A1D6HN96 | MapMan:35.1 | : |
Description
Probable CCR4-associated factor 1 homolog 11
Coordinates
chr5:+:219577710..219578674
Molecular Weight (calculated)
8907.5 Da
IEP (calculated)
4.121
GRAVY (calculated)
-0.392
Length
79 amino acids
Sequence
(BLAST)
(BLAST)
1: MAMSDLTATV IPKPDGADDE SVEIREVWAD NLEEEFALIR DIVDEYPFVA MDTEFPGIVC RPDRKGGKCA RRLTERSSM
001: MSLFLKDDSI QIREVWNDNL ESEMALIREV VDDFPFVAMD TEFPGIVCRP VGTFKTNTEY HYETLKTNVN ILKMIQLGLT FSDEKGNLPT CGTDNKYCIW
101: QFNFREFDLE SDIYATDSIE LLRQSGIDFV KNNEFGIDSK RFAELLMSSG IVLNENVHWV TFHSGYDFGY LLKLLTCQNL PETQTGFFEM ISVYFPRVYD
201: IKHLMKFCNS LHGGLNKLAE LLDVERVGIC HQAGSDSLLT SCTFRKLQEN FFIGSMEKYS GVLYGLGVEN GQIVH
101: QFNFREFDLE SDIYATDSIE LLRQSGIDFV KNNEFGIDSK RFAELLMSSG IVLNENVHWV TFHSGYDFGY LLKLLTCQNL PETQTGFFEM ISVYFPRVYD
201: IKHLMKFCNS LHGGLNKLAE LLDVERVGIC HQAGSDSLLT SCTFRKLQEN FFIGSMEKYS GVLYGLGVEN GQIVH
Arabidopsis Description
CAF1-7Probable CCR4-associated factor 1 homolog 7 [Source:UniProtKB/Swiss-Prot;Acc:Q9SKZ2]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.