Factsheet for GSMUA_Achr9P13270_001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 4
nucleus 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	cytosol
EpiLoc:	cytosol
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr3P04600_001	Banana	nucleus	83.64	93.88
VIT_09s0070g00060.t01	Wine grape	nucleus	81.82	82.12
KRH52356	Soybean	nucleus	80.36	80.95
KRH47360	Soybean	nucleus	81.09	80.51
Solyc03g117030.1.1	Tomato	nucleus	80.0	80.29
PGSC0003DMT400036620	Potato	nucleus	79.64	79.93
KRH61689	Soybean	nucleus	79.27	79.85
AT2G32070.1	Thale cress	nucleus	78.91	78.91
KRH44539	Soybean	cytosol	80.36	78.65
PGSC0003DMT400058833	Potato	cytosol	78.18	78.47
VIT_04s0008g05850.t01	Wine grape	nucleus	77.82	78.39
PGSC0003DMT400073328	Potato	nucleus	77.09	77.66
Solyc11g045130.1.1	Tomato	cytosol	77.09	77.37
VIT_11s0037g00100.t01	Wine grape	nucleus	75.27	76.67
Bra005614.1-P	Field mustard	nucleus	76.36	76.09
CDY64914	Canola	nucleus	76.36	76.09
CDY12234	Canola	nucleus	76.0	75.72
CDX87343	Canola	cytosol	74.91	74.91
Bra035152.1-P	Field mustard	cytosol	74.91	74.91
EES05957	Sorghum	nucleus	78.18	74.65
CDY39943	Canola	cytosol	74.55	74.55
EER96736	Sorghum	nucleus	75.27	74.19
Bra008439.1-P	Field mustard	nucleus	73.82	74.09
CDY53227	Canola	nucleus	73.82	74.09
Solyc06g068410.2.1	Tomato	nucleus	67.64	73.81
CDY63973	Canola	nucleus	73.45	73.72
HORVU6Hr1G085410.1	Barley	cytosol	77.09	73.36
TraesCS6A01G358700.1	Wheat	cytosol	77.09	73.36
TraesCS6B01G391400.1	Wheat	cytosol	77.09	73.36
TraesCS6D01G341500.1	Wheat	cytosol	77.09	73.36
Os09t0416800-01	Rice	cytosol	74.18	72.86
Zm00001d052031_P001	Maize	cytosol	76.0	72.82
TraesCS5A01G225900.1	Wheat	cytosol	73.82	72.76
TraesCS5B01G224400.1	Wheat	cytosol	73.82	72.76
TraesCS5D01G233200.1	Wheat	cytosol	73.82	72.76
Zm00001d020486_P001	Maize	extracellular	73.45	72.4
Os02t0796300-01	Rice	cytosol	77.45	72.2
AT1G80780.3	Thale cress	cytosol	73.82	70.98
AT5G10960.1	Thale cress	nucleus	70.55	70.04
CDX70376	Canola	nucleus	70.18	69.93
CDX69796	Canola	nucleus	70.55	69.78
CDX78405	Canola	nucleus	70.18	69.42
Bra006083.1-P	Field mustard	nucleus	70.18	69.42
Bra009001.1-P	Field mustard	nucleus	70.18	68.93
CDX97069	Canola	nucleus	69.82	68.57
GSMUA_Achr9P22440_001	Banana	cytosol	61.82	67.46
GSMUA_Achr4P04150_001	Banana	cytosol	65.45	66.91
GSMUA_Achr4P04220_001	Banana	nucleus	65.09	66.54
TraesCS7B01G198900.1	Wheat	nucleus	69.45	64.97
GSMUA_Achr4P11450_001	Banana	cytosol	63.27	64.68
TraesCS7A01G297000.1	Wheat	nucleus	69.09	64.63
TraesCS7D01G291400.1	Wheat	nucleus	69.09	64.63
HORVU7Hr1G067520.3	Barley	nucleus	68.36	62.67
AT1G15920.2	Thale cress	nucleus	63.64	61.19
Os08t0440300-03	Rice	cytosol	64.0	61.11
EES13910	Sorghum	nucleus	61.09	58.74
KRH28796	Soybean	nucleus	20.73	58.16
GSMUA_Achr2P05120_001	Banana	cytosol	54.18	57.98
GSMUA_Achr9P29700_001	Banana	cytosol	44.73	57.75
CDY35049	Canola	nucleus	56.0	55.8
GSMUA_Achr6P19450_001	Banana	cytosol	48.73	54.92
Zm00001d050433_P001	Maize	nucleus	55.64	54.64
Zm00001d018378_P001	Maize	nucleus	15.64	54.43
Bra026093.1-P	Field mustard	nucleus	56.0	51.51
GSMUA_Achr1P10040_001	Banana	nucleus	51.64	50.9
GSMUA_Achr6P19460_001	Banana	cytosol	30.55	48.55
Zm00001d032158_P002	Maize	plastid	60.36	41.71
GSMUA_AchrUn_...	Banana	mitochondrion	38.55	41.25
GSMUA_Achr8P18010_001	Banana	mitochondrion	38.55	40.93
CDY12236	Canola	cytosol, extracellular	57.82	38.59
GSMUA_Achr4P30930_001	Banana	cytosol	25.09	35.38
CDY33367	Canola	cytosol, extracellular	56.73	34.36
GSMUA_Achr4P30910_001	Banana	nucleus	34.18	27.81

Protein Annotations

EnsemblPlants:GSMUA_Achr9P13270_001	EnsemblPlants:GSMUA_Achr9T13270_001	EnsemblPlantsGene:GSMUA_Achr9G13270_001	Gene3D:3.30.420.10	GO:GO:0003674	GO:GO:0003676
GO:GO:0005488	InterPro:IPR036397	InterPro:RNaseH-like_sf	InterPro:RNaseH_sf	InterPro:RNase_CAF1	PANTHER:PTHR10797
PANTHER:PTHR10797:SF34	PFAM:PF04857	SUPFAM:SSF53098	UniParc:UPI00029672F9	UniProt:M0TZY5	MapMan:16.8.2.1.2.2

Description

Probable CCR4-associated factor 1 homolog 7 [Source:GMGC_GENE;Acc:GSMUA_Achr9G13270_001]

Coordinates

chr9:-:8631534..8632541

Molecular Weight (calculated)

31011.0 Da

IEP (calculated)

5.154

GRAVY (calculated)

-0.109

Length

275 amino acids

Sequence
(BLAST)

001: MSSILPKNET VQIREVWSNN LEQEFALIRE IVDDFPFVAM DTEFPGIVCR PLGNFRTSSD FNYATLKANV DMLKLIQLGL TLSDEHGSLP TCGTDRGCVW
101: QFNFREFDIQ RDVFASDSIE LLRQSGIDFK KNNEKGIDAQ RFGELLMSSG IVLNDSVHWV TFHSGYDFGY LLKLLTCQNL PETQAGFFNL IKIYFPTVYD
201: IKHLMKFCNS LHGGLNKLAE LLDVERVGIC HQAGSDSLLT SCAFRKLKES FFNGSTEKYA GVLYGLGVEN GQTAH

Best Arabidopsis Sequence Match ( AT2G32070.1 )
(BLAST)

001: MSLFLKDDSI QIREVWNDNL ESEMALIREV VDDFPFVAMD TEFPGIVCRP VGTFKTNTEY HYETLKTNVN ILKMIQLGLT FSDEKGNLPT CGTDNKYCIW
101: QFNFREFDLE SDIYATDSIE LLRQSGIDFV KNNEFGIDSK RFAELLMSSG IVLNENVHWV TFHSGYDFGY LLKLLTCQNL PETQTGFFEM ISVYFPRVYD
201: IKHLMKFCNS LHGGLNKLAE LLDVERVGIC HQAGSDSLLT SCTFRKLQEN FFIGSMEKYS GVLYGLGVEN GQIVH

Arabidopsis Description

CAF1-7Probable CCR4-associated factor 1 homolog 7 [Source:UniProtKB/Swiss-Prot;Acc:Q9SKZ2]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.