Factsheet for Solyc11g045130.1.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 4
nucleus 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	cytosol
EpiLoc:	cytosol
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400058833	Potato	cytosol	96.72	96.72
KRH52356	Soybean	nucleus	81.75	82.05
KRH61689	Soybean	nucleus	81.02	81.32
VIT_04s0008g05850.t01	Wine grape	nucleus	79.2	79.49
Solyc03g117030.1.1	Tomato	nucleus	78.47	78.47
GSMUA_Achr3P04600_001	Banana	nucleus	69.71	77.96
GSMUA_Achr9P13270_001	Banana	cytosol	77.37	77.09
Solyc06g068410.2.1	Tomato	nucleus	69.34	75.4
AT2G32070.1	Thale cress	nucleus	74.82	74.55
Bra005614.1-P	Field mustard	nucleus	74.45	73.91
CDY64914	Canola	nucleus	74.45	73.91
Bra008439.1-P	Field mustard	nucleus	72.99	72.99
CDY53227	Canola	nucleus	72.99	72.99
CDY12234	Canola	nucleus	73.36	72.83
CDY39943	Canola	cytosol	72.99	72.73
CDX87343	Canola	cytosol	72.99	72.73
Bra035152.1-P	Field mustard	cytosol	72.99	72.73
CDY63973	Canola	nucleus	72.63	72.63
AT1G80780.3	Thale cress	cytosol	72.26	69.23
KRH28796	Soybean	nucleus	24.45	68.37
AT5G10960.1	Thale cress	nucleus	68.98	68.23
CDX70376	Canola	nucleus	68.25	67.75
Bra006083.1-P	Field mustard	nucleus	68.61	67.63
CDX78405	Canola	nucleus	68.61	67.63
EER96736	Sorghum	nucleus	68.61	67.38
Os09t0416800-01	Rice	cytosol	68.61	67.14
CDX69796	Canola	nucleus	67.88	66.91
CDX97069	Canola	nucleus	68.25	66.79
EES05957	Sorghum	nucleus	70.07	66.67
Bra009001.1-P	Field mustard	nucleus	67.88	66.43
TraesCS5D01G233200.1	Wheat	cytosol	67.52	66.31
TraesCS5B01G224400.1	Wheat	cytosol	67.52	66.31
TraesCS5A01G225900.1	Wheat	cytosol	67.52	66.31
Zm00001d052031_P001	Maize	cytosol	68.98	65.85
TraesCS6A01G358700.1	Wheat	cytosol	69.34	65.74
TraesCS6B01G391400.1	Wheat	cytosol	69.34	65.74
TraesCS6D01G341500.1	Wheat	cytosol	69.34	65.74
HORVU6Hr1G085410.1	Barley	cytosol	69.34	65.74
Zm00001d020486_P001	Maize	extracellular	66.79	65.59
Os02t0796300-01	Rice	cytosol	68.98	64.07
GSMUA_Achr9P22440_001	Banana	cytosol	58.03	63.1
GSMUA_Achr4P04150_001	Banana	cytosol	61.31	62.45
GSMUA_Achr4P11450_001	Banana	cytosol	61.31	62.45
GSMUA_Achr4P04220_001	Banana	nucleus	60.95	62.08
TraesCS7B01G198900.1	Wheat	nucleus	64.96	60.54
TraesCS7D01G291400.1	Wheat	nucleus	64.6	60.2
TraesCS7A01G297000.1	Wheat	nucleus	64.23	59.86
GSMUA_Achr2P05120_001	Banana	cytosol	55.47	59.14
HORVU7Hr1G067520.3	Barley	nucleus	64.6	59.0
AT1G15920.2	Thale cress	nucleus	61.31	58.74
Solyc06g074030.1.1	Tomato	nucleus	54.38	56.44
Os08t0440300-03	Rice	cytosol	57.66	54.86
CDY35049	Canola	nucleus	54.74	54.35
EES13910	Sorghum	nucleus	56.57	54.2
Solyc11g068770.1.1	Tomato	nucleus	54.38	52.28
Zm00001d050433_P001	Maize	nucleus	51.82	50.71
Zm00001d018378_P001	Maize	nucleus	14.6	50.63
Bra026093.1-P	Field mustard	nucleus	55.11	50.5
GSMUA_Achr1P10040_001	Banana	nucleus	50.73	49.82
Solyc01g009360.1.1	Tomato	nucleus	46.35	46.18
Solyc01g009350.2.1	Tomato	nucleus	44.89	44.89
Solyc01g007840.2.1	Tomato	plastid	46.35	44.56
Zm00001d032158_P002	Maize	plastid	56.2	38.69
CDY12236	Canola	cytosol, extracellular	56.2	37.38
CDY33367	Canola	cytosol, extracellular	56.57	34.14

Protein Annotations

Gene3D:3.30.420.10	MapMan:35.1	GO:GO:0000932	GO:GO:0003674	GO:GO:0003676	GO:GO:0003824
GO:GO:0004518	GO:GO:0004535	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0006139	GO:GO:0006412	GO:GO:0008150	GO:GO:0008152	GO:GO:0009056
GO:GO:0009058	GO:GO:0009987	GO:GO:0016787	GO:GO:0017148	GO:GO:0019538	GO:GO:0030015
GO:GO:0043928	GO:GO:0090503	InterPro:IPR036397	UniProt:K4D8H7	PFAM:PF04857	PANTHER:PTHR10797
PANTHER:PTHR10797:SF34	InterPro:RNaseH-like_sf	InterPro:RNaseH_sf	InterPro:RNase_CAF1	SUPFAM:SSF53098	EnsemblPlantsGene:Solyc11g045130.1
EnsemblPlants:Solyc11g045130.1.1	UniParc:UPI000276A5F8	:	:	:	:

Description

Probable CCR4-associated factor 1 homolog 10 [Source:Projected from Arabidopsis thaliana (AT5G10960) UniProtKB/Swiss-Prot;Acc:Q9LEU4]

Coordinates

chr11:-:31703498..31704322

Molecular Weight (calculated)

31420.6 Da

IEP (calculated)

4.637

GRAVY (calculated)

-0.144

Length

274 amino acids

Sequence
(BLAST)

001: MSVLPKIDSI KIREVWSDNL EKEFALIRQI VDDYPYIAMD TEFPGVVLRP VGNFKHINEY NYQTLKDNVD MLNLIQLGLT FSDENGNLPT CESEYYYVWQ
101: FNFREFDTKA NIFANDSIEL LIQSGIDFKK NNEMGIDAKQ FGELLMSSGI VLNDMVHWVT FHSGYDFGYL LKLLTCRTLP ETQSGFFDLL NMYFPLVYDI
201: KHLMKFCNSL HGGLNKLAEL LEIERVGICH QAGSDSLLTS CAFKKLKDNF FNGSTEKYAG VLYGLGVEYG SDNK

Best Arabidopsis Sequence Match ( AT2G32070.1 )
(BLAST)

001: MSLFLKDDSI QIREVWNDNL ESEMALIREV VDDFPFVAMD TEFPGIVCRP VGTFKTNTEY HYETLKTNVN ILKMIQLGLT FSDEKGNLPT CGTDNKYCIW
101: QFNFREFDLE SDIYATDSIE LLRQSGIDFV KNNEFGIDSK RFAELLMSSG IVLNENVHWV TFHSGYDFGY LLKLLTCQNL PETQTGFFEM ISVYFPRVYD
201: IKHLMKFCNS LHGGLNKLAE LLDVERVGIC HQAGSDSLLT SCTFRKLQEN FFIGSMEKYS GVLYGLGVEN GQIVH

Arabidopsis Description

CAF1-7Probable CCR4-associated factor 1 homolog 7 [Source:UniProtKB/Swiss-Prot;Acc:Q9SKZ2]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.