Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- cytosol 3
- nucleus 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| AT1G27820.1 | Thale cress | cytosol | 93.71 | 91.29 |
| AT1G61470.1 | Thale cress | nucleus | 75.83 | 82.37 |
| AT3G44240.1 | Thale cress | cytosol | 39.74 | 50.21 |
| CDY26919 | Canola | cytosol | 49.01 | 45.96 |
| CDX73277 | Canola | cytosol | 49.01 | 45.82 |
| CDY22569 | Canola | cytosol | 53.64 | 35.84 |
| CDY12276 | Canola | cytosol | 41.72 | 35.59 |
| GSMUA_Achr4P30930_001 | Banana | cytosol | 20.86 | 32.31 |
| AT1G06450.1 | Thale cress | cytosol | 37.75 | 31.67 |
| AT5G10960.1 | Thale cress | nucleus | 28.81 | 31.41 |
| AT2G32070.1 | Thale cress | nucleus | 27.15 | 29.82 |
| AT5G22250.1 | Thale cress | cytosol | 27.15 | 29.5 |
| AT1G15920.2 | Thale cress | nucleus | 27.81 | 29.37 |
| AT1G80780.3 | Thale cress | cytosol | 26.82 | 28.32 |
| AT3G44260.1 | Thale cress | cytosol | 26.16 | 28.21 |
| GSMUA_Achr4P30910_001 | Banana | nucleus | 31.13 | 27.81 |
| Bra023214.1-P | Field mustard | cytosol | 40.4 | 22.1 |
Protein Annotations
| Gene3D:3.30.420.10 | MapMan:35.1 | EntrezGene:839682 | ProteinID:AAG50583.1 | ProteinID:AAG51471.1 | ProteinID:AEE30888.1 |
| ArrayExpress:AT1G27890 | EnsemblPlantsGene:AT1G27890 | RefSeq:AT1G27890 | TAIR:AT1G27890 | RefSeq:AT1G27890-TAIR-G | EnsemblPlants:AT1G27890.1 |
| TAIR:AT1G27890.1 | GO:GO:0000932 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003723 | GO:GO:0003824 |
| GO:GO:0004518 | GO:GO:0004527 | GO:GO:0004535 | GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 |
| GO:GO:0005623 | GO:GO:0005634 | GO:GO:0005737 | GO:GO:0006139 | GO:GO:0006351 | GO:GO:0006355 |
| GO:GO:0006412 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009056 | GO:GO:0009058 | GO:GO:0009987 |
| GO:GO:0016787 | GO:GO:0017148 | GO:GO:0019538 | GO:GO:0030015 | GO:GO:0043928 | GO:GO:0046872 |
| GO:GO:0090305 | GO:GO:0090503 | InterPro:IPR036397 | RefSeq:NP_174110.1 | PFAM:PF04857 | PO:PO:0000293 |
| PANTHER:PTHR10797 | PANTHER:PTHR10797:SF16 | UniProt:Q9C6M9 | InterPro:RNaseH-like_sf | InterPro:RNaseH_sf | InterPro:RNase_CAF1 |
| SUPFAM:SSF53098 | UniParc:UPI00000AA370 | SEG:seg | : | : | : |
Description
CAF1-4Putative CCR4-associated factor 1 homolog 4 [Source:UniProtKB/Swiss-Prot;Acc:Q9C6M9]
Coordinates
chr1:-:9714136..9715176
Molecular Weight (calculated)
34863.9 Da
IEP (calculated)
7.871
GRAVY (calculated)
-0.468
Length
302 amino acids
Sequence
(BLAST)
(BLAST)
001: MGEVWRWNKE VEMDSIRDCL KHFSSIAIDT EFPGCLKETP MDASEEIRYR DMKFNVDNTH LIQLGFTLFD RRGITKTWEI NLSDFNEHKC FKNDKSIAFL
101: KSNGLNLDKI GEEGIGIEEF FRDFSQILKE KDGKITWVNF QGSYDNAYLV KGLTGGKPLP ETKEEFHETV EQLLGKFVFD VKKIAESCSG LSSRFGLQRI
201: ADVLQMKRVG KAHHAGSDSE LTARVFTKLT FDLLNSRKQC VRRVDHQQYQ LEQQQLMMTR CYIPIPIPIP RPRSVMFAAH HPNPYFGGGY FGMPVQGRNY
301: VL
101: KSNGLNLDKI GEEGIGIEEF FRDFSQILKE KDGKITWVNF QGSYDNAYLV KGLTGGKPLP ETKEEFHETV EQLLGKFVFD VKKIAESCSG LSSRFGLQRI
201: ADVLQMKRVG KAHHAGSDSE LTARVFTKLT FDLLNSRKQC VRRVDHQQYQ LEQQQLMMTR CYIPIPIPIP RPRSVMFAAH HPNPYFGGGY FGMPVQGRNY
301: VL
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.