Subcellular Localization
min:
: max
Winner_takes_all: plastid, nucleus, cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 1
- mitochondrion 1
- plastid 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY46317 | Canola | cytosol, nucleus, plastid | 89.47 | 90.67 |
| Bra023825.1-P | Field mustard | cytosol, nucleus, plastid | 90.41 | 90.07 |
| CDY34252 | Canola | cytosol, nucleus, plastid | 88.35 | 90.04 |
| AT4G14900.1 | Thale cress | nucleus | 81.95 | 81.95 |
| VIT_05s0020g03470.t01 | Wine grape | nucleus | 71.05 | 72.41 |
| KRH35520 | Soybean | cytosol | 68.8 | 69.06 |
| KRG91301 | Soybean | cytosol | 67.86 | 68.89 |
| Solyc09g076050.2.1 | Tomato | nucleus | 65.98 | 68.29 |
| PGSC0003DMT400077344 | Potato | nucleus | 65.23 | 67.51 |
| CDY38318 | Canola | nucleus | 66.92 | 67.04 |
| GSMUA_Achr2P12700_001 | Banana | nucleus | 49.81 | 54.19 |
| GSMUA_Achr7P01520_001 | Banana | nucleus | 49.25 | 53.69 |
| GSMUA_Achr4P28440_001 | Banana | cytosol | 29.51 | 51.14 |
| GSMUA_AchrUn_... | Banana | cytosol, nucleus | 21.99 | 50.0 |
| Os07t0173200-02 | Rice | cytosol | 44.55 | 44.38 |
| Os03t0794900-01 | Rice | nucleus | 44.55 | 43.09 |
| Zm00001d007835_P002 | Maize | cytosol, endoplasmic reticulum, nucleus | 43.8 | 40.31 |
| Zm00001d018911_P001 | Maize | cytosol | 45.49 | 39.87 |
| HORVU5Hr1G104870.1 | Barley | cytosol | 41.35 | 39.64 |
| TraesCS5D01G442300.1 | Wheat | cytosol | 40.98 | 39.49 |
| TraesCS5A01G434500.1 | Wheat | cytosol | 40.98 | 39.35 |
| TraesCS5B01G437500.2 | Wheat | cytosol | 40.98 | 39.28 |
| KXG34492 | Sorghum | nucleus | 45.3 | 39.0 |
| AT5G48385.1 | Thale cress | cytosol | 26.5 | 25.27 |
| HORVU3Hr1G033190.1 | Barley | nucleus | 4.7 | 23.58 |
| AT5G16320.1 | Thale cress | nucleus | 20.3 | 22.98 |
| AT1G31814.1 | Thale cress | cytosol | 19.36 | 21.78 |
| AT4G00650.1 | Thale cress | plastid | 9.21 | 15.61 |
| AT5G27230.1 | Thale cress | nucleus | 20.3 | 11.39 |
Protein Annotations
| MapMan:35.1 | EntrezGene:821815 | UniProt:A0A178V8B2 | ProteinID:AEE76640.1 | ArrayExpress:AT3G22440 | EnsemblPlantsGene:AT3G22440 |
| RefSeq:AT3G22440 | TAIR:AT3G22440 | RefSeq:AT3G22440-TAIR-G | EnsemblPlants:AT3G22440.1 | TAIR:AT3G22440.1 | EMBL:AY050770 |
| EMBL:AY085142 | EMBL:AY096625 | Unigene:At.24509 | ProteinID:BAB01784.1 | ncoils:Coil | InterPro:Frigida |
| GO:GO:0000003 | GO:GO:0003674 | GO:GO:0007275 | GO:GO:0008150 | GO:GO:0009791 | GO:GO:0009908 |
| GO:GO:0009987 | GO:GO:0030154 | RefSeq:NP_566709.1 | ProteinID:OAP01655.1 | PFAM:PF07899 | PO:PO:0000013 |
| PO:PO:0000037 | PO:PO:0000230 | PO:PO:0000293 | PO:PO:0001054 | PO:PO:0001078 | PO:PO:0001081 |
| PO:PO:0001185 | PO:PO:0004507 | PO:PO:0007064 | PO:PO:0007095 | PO:PO:0007098 | PO:PO:0007103 |
| PO:PO:0007115 | PO:PO:0007123 | PO:PO:0007611 | PO:PO:0007616 | PO:PO:0008019 | PO:PO:0009005 |
| PO:PO:0009006 | PO:PO:0009009 | PO:PO:0009010 | PO:PO:0009025 | PO:PO:0009029 | PO:PO:0009030 |
| PO:PO:0009031 | PO:PO:0009032 | PO:PO:0009046 | PO:PO:0009047 | PO:PO:0009052 | PO:PO:0020030 |
| PO:PO:0020038 | PO:PO:0020100 | PO:PO:0020137 | PO:PO:0025022 | PO:PO:0025281 | PANTHER:PTHR31791 |
| PANTHER:PTHR31791:SF2 | UniProt:Q9LUV4 | UniParc:UPI00000A1386 | SEG:seg | : | : |
Description
FRL4AFRIGIDA-like protein 4a [Source:UniProtKB/Swiss-Prot;Acc:Q9LUV4]
Coordinates
chr3:+:7959753..7962371
Molecular Weight (calculated)
59232.6 Da
IEP (calculated)
6.955
GRAVY (calculated)
-0.479
Length
532 amino acids
Sequence
(BLAST)
(BLAST)
001: MGSVPDPGEL TELAQPSFEE FQKQTSLMTS CTLLWQELSD HFTSLEQNLM KKSEALKQMI ETLDNQTQTS LESLKRREVT IDHSVEIVAG KVGERARAAL
101: ESLEKARDGC GDGSNDDSGD VDDEEGLLSA LKSLCLKMDA RGFWNFVTAR KKELENLRSK IPAALVDCVD PAMLVLEAIS EVFPVDTRGD KVSNDYGWAC
201: VVILESLTPV IVDPVIGKSR LLVTPSVKEK AKEIAETWKK SLEERGRIEN VKTPDVHTFL QHLVTFGIVK SEDLALYRKL VVGSAWRKQM PKLAVSVGLG
301: DQMPDMIEEL ISRGQQLDAV HFTYEVGLVD KFPPVPLLKA YLRDAKKSAA SIMEDSSNTG RATHLVARKE QSALKAVLKC IEEYKLEEEF PPENLKKRLD
401: QLEKTKTEKR KPAAVPANKR TRASYNGPMP PAKAGRITNA YVSSFPFIRS PSHSPQYASP AAYPSPPTTV YSNRSPPYPY SPEIIPGSYQ GSPIGYPAYN
501: GYCNGPVPAP APPVYHPHHH QHHQFHHQQH YY
101: ESLEKARDGC GDGSNDDSGD VDDEEGLLSA LKSLCLKMDA RGFWNFVTAR KKELENLRSK IPAALVDCVD PAMLVLEAIS EVFPVDTRGD KVSNDYGWAC
201: VVILESLTPV IVDPVIGKSR LLVTPSVKEK AKEIAETWKK SLEERGRIEN VKTPDVHTFL QHLVTFGIVK SEDLALYRKL VVGSAWRKQM PKLAVSVGLG
301: DQMPDMIEEL ISRGQQLDAV HFTYEVGLVD KFPPVPLLKA YLRDAKKSAA SIMEDSSNTG RATHLVARKE QSALKAVLKC IEEYKLEEEF PPENLKKRLD
401: QLEKTKTEKR KPAAVPANKR TRASYNGPMP PAKAGRITNA YVSSFPFIRS PSHSPQYASP AAYPSPPTTV YSNRSPPYPY SPEIIPGSYQ GSPIGYPAYN
501: GYCNGPVPAP APPVYHPHHH QHHQFHHQQH YY
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.