CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus, secretory
BaCelLo:	nucleus
MultiLoc:	nucleus
PProwler:	secretory
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
EER88029
EER92496
EES01849
EES02078
EES02294
EES05044
EES12321
EES14765
EES19051
KXG32187
KXG32474
KXG34492
KXG39164
OQU89210

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G22440.1	EES01849	AT1G33470.1	21798944
AT3G22440.1	EES02078	AT1G33470.1	21798944
AT3G22440.1	EES05044	AT2G04400.1	15714319
AT3G22440.1	EES12321	AT2G04400.1	15714319
AT3G22440.1	EES14765	AT2G04400.1	15714319
AT3G22440.1	OQU89210	AT2G04400.1	15714319
AT3G22440.1	KXG32187	AT4G02150.1	21798944
AT3G22440.1	KXG34492	AT4G14900.1	21798944
AT4G14900.1	EES19051	AT2G47700.1	21798944
AT4G14900.1	KXG32474	AT2G47700.1	21798944
AT4G14900.1	EER88029	AT3G13990.1	21798944
AT4G14900.1	KXG39164	AT3G13990.1	21798944
AT4G14900.1	EES02294	AT5G48385.1	21798944
AT4G14900.1	EER92496	AT5G59210.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d018911_P001	Maize	cytosol	85.6	87.15
Zm00001d007835_P002	Maize	cytosol, endoplasmic reticulum, nucleus	81.39	87.02
Os07t0173200-02	Rice	cytosol	70.87	82.02
GSMUA_AchrUn_...	Banana	cytosol, nucleus	23.3	61.54
GSMUA_Achr7P01520_001	Banana	nucleus	47.73	60.45
GSMUA_Achr2P12700_001	Banana	nucleus	47.09	59.51
VIT_05s0020g03470.t01	Wine grape	nucleus	41.91	49.62
KRH35520	Soybean	cytosol	42.07	49.06
KRG91301	Soybean	cytosol	41.59	49.05
CDY46317	Canola	cytosol, nucleus, plastid	39.48	46.48
Solyc09g076050.2.1	Tomato	nucleus	38.51	46.3
PGSC0003DMT400077344	Potato	nucleus	38.51	46.3
Bra023825.1-P	Field mustard	cytosol, nucleus, plastid	39.32	45.51
CDY34252	Canola	cytosol, nucleus, plastid	38.35	45.4
AT3G22440.1	Thale cress	cytosol, nucleus, plastid	39.0	45.3
AT4G14900.1	Thale cress	nucleus	37.54	43.61
CDY38318	Canola	nucleus	29.61	34.46
EES02294	Sorghum	nucleus	23.3	26.87
KXG31679	Sorghum	nucleus	25.89	25.28
EER99638	Sorghum	cytosol	22.17	22.2
EER92706	Sorghum	plastid	16.83	20.27
EER93089	Sorghum	plastid	12.14	16.23

Protein Annotations

EnsemblPlants:KXG34492	EnsemblPlantsGene:SORBI_3002G049000	GO:GO:0000003	GO:GO:0007275	GO:GO:0008150	GO:GO:0009791
GO:GO:0009908	GO:GO:0009987	GO:GO:0030154	InterPro:Frigida	ncoils:Coil	PANTHER:PTHR31791
PANTHER:PTHR31791:SF11	PFAM:PF07899	ProteinID:KXG34492	ProteinID:KXG34492.1	SEG:seg	UniParc:UPI00081ACCE8
UniProt:A0A1B6Q992	MapMan:35.1	:	:	:	:

Description

hypothetical protein

Coordinates

chr2:-:4633034..4636671

Molecular Weight (calculated)

66336.8 Da

IEP (calculated)

7.888

GRAVY (calculated)

-0.449

Length

618 amino acids

Sequence
(BLAST)

001: MASPAAAAAK GSKGGEDGGG PVTGDMVSAG FAELERQQQL LATCTRLYQQ LADHFGSLER GLAARSEQLR VRRRAFDART HRALDSLHRR EASVDTSVSR
101: ALDHLHSISK EAAAAPAPTP SDSAASEEGL AESLRALCLR MDSSAFLGYV VTHRKEADAL RSEMPAALKL CVDPAKFVMD AVADVFPVDR REVPRNPADL
201: AWACVLILEA AVPALADPDP DIGAARPLVP RAARERARGM AREWKEAVEK KGGVEGAKPP DAHAFLQHVA TFAVAEREDR PLYRRIVVSF SWRRQMPRLA
301: LTLGLEEEMA DIIEELIAKR QQLDAVNFAY EAGLQEKFPP VPLLKSYLED SKKTSTAASD NSSTSSGQSG SNANKKEQSA LRAVIKCVED HNLEAEFSLE
401: DLRKQLEELE KAKTEKKKAA SSATSGSSSG PATKRIRASN GGPMPPAKAG RLTNNACVSS FPAPTTFTQS PSHASYATTS PSHTSYATTS PSHTAYATTS
501: PSHTAYAMTS PSHTAYATAS PSHPTYATAS PSHPSYTTAS PYPYDRPVGH GLYCNRSPPV IREPYVYPAE EVASVNVGIP MPYSTPPMSY PAPYGGYGNG
601: MAAYTNGMAP AFHQAYYR

Best Arabidopsis Sequence Match ( AT3G22440.1 )
(BLAST)

001: MGSVPDPGEL TELAQPSFEE FQKQTSLMTS CTLLWQELSD HFTSLEQNLM KKSEALKQMI ETLDNQTQTS LESLKRREVT IDHSVEIVAG KVGERARAAL
101: ESLEKARDGC GDGSNDDSGD VDDEEGLLSA LKSLCLKMDA RGFWNFVTAR KKELENLRSK IPAALVDCVD PAMLVLEAIS EVFPVDTRGD KVSNDYGWAC
201: VVILESLTPV IVDPVIGKSR LLVTPSVKEK AKEIAETWKK SLEERGRIEN VKTPDVHTFL QHLVTFGIVK SEDLALYRKL VVGSAWRKQM PKLAVSVGLG
301: DQMPDMIEEL ISRGQQLDAV HFTYEVGLVD KFPPVPLLKA YLRDAKKSAA SIMEDSSNTG RATHLVARKE QSALKAVLKC IEEYKLEEEF PPENLKKRLD
401: QLEKTKTEKR KPAAVPANKR TRASYNGPMP PAKAGRITNA YVSSFPFIRS PSHSPQYASP AAYPSPPTTV YSNRSPPYPY SPEIIPGSYQ GSPIGYPAYN
501: GYCNGPVPAP APPVYHPHHH QHHQFHHQQH YY

Arabidopsis Description

FRL4AFRIGIDA-like protein 4a [Source:UniProtKB/Swiss-Prot;Acc:Q9LUV4]
SUBAcon: [plastid,nucleus,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.