Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| AT3G22440.1 | Thale cress | cytosol, nucleus, plastid | 81.95 | 81.95 |
| VIT_05s0020g03470.t01 | Wine grape | nucleus | 68.8 | 70.11 |
| KRG91301 | Soybean | cytosol | 65.79 | 66.79 |
| Solyc09g076050.2.1 | Tomato | nucleus | 64.1 | 66.34 |
| KRH35520 | Soybean | cytosol | 65.79 | 66.04 |
| PGSC0003DMT400077344 | Potato | nucleus | 63.53 | 65.76 |
| GSMUA_Achr2P12700_001 | Banana | nucleus | 49.06 | 53.37 |
| GSMUA_Achr7P01520_001 | Banana | nucleus | 47.93 | 52.25 |
| GSMUA_Achr4P28440_001 | Banana | cytosol | 29.51 | 51.14 |
| GSMUA_AchrUn_... | Banana | cytosol, nucleus | 20.68 | 47.01 |
| Os07t0173200-02 | Rice | cytosol | 43.8 | 43.63 |
| Os03t0794900-01 | Rice | nucleus | 42.86 | 41.45 |
| Zm00001d007835_P002 | Maize | cytosol, endoplasmic reticulum, nucleus | 43.42 | 39.97 |
| HORVU5Hr1G104870.1 | Barley | cytosol | 40.6 | 38.92 |
| TraesCS5D01G442300.1 | Wheat | cytosol | 40.23 | 38.77 |
| TraesCS5A01G434500.1 | Wheat | cytosol | 40.23 | 38.63 |
| TraesCS5B01G437500.2 | Wheat | cytosol | 40.23 | 38.56 |
| Zm00001d018911_P001 | Maize | cytosol | 43.98 | 38.55 |
| KXG34492 | Sorghum | nucleus | 43.61 | 37.54 |
| AT5G48385.1 | Thale cress | cytosol | 26.88 | 25.63 |
| HORVU3Hr1G033190.1 | Barley | nucleus | 4.7 | 23.58 |
| AT5G16320.1 | Thale cress | nucleus | 19.36 | 21.91 |
| AT1G31814.1 | Thale cress | cytosol | 18.98 | 21.35 |
| AT4G00650.1 | Thale cress | plastid | 9.4 | 15.92 |
| AT5G27230.1 | Thale cress | nucleus | 19.55 | 10.97 |
Protein Annotations
| MapMan:35.1 | EntrezGene:827147 | ProteinID:AEE83517.1 | EMBL:AL117321 | ArrayExpress:AT4G14900 | EnsemblPlantsGene:AT4G14900 |
| RefSeq:AT4G14900 | TAIR:AT4G14900 | RefSeq:AT4G14900-TAIR-G | EnsemblPlants:AT4G14900.1 | TAIR:AT4G14900.1 | EMBL:AY054618 |
| EMBL:AY060551 | EMBL:AY081543 | EMBL:AY086472 | ncoils:Coil | InterPro:Frigida | GO:GO:0000003 |
| GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0007275 | GO:GO:0008150 | GO:GO:0009791 |
| GO:GO:0009908 | GO:GO:0009987 | GO:GO:0030154 | RefSeq:NP_567447.1 | PFAM:PF07899 | PO:PO:0000013 |
| PO:PO:0000037 | PO:PO:0000230 | PO:PO:0000293 | PO:PO:0001054 | PO:PO:0001078 | PO:PO:0001081 |
| PO:PO:0001185 | PO:PO:0004507 | PO:PO:0007064 | PO:PO:0007095 | PO:PO:0007098 | PO:PO:0007103 |
| PO:PO:0007115 | PO:PO:0007123 | PO:PO:0007611 | PO:PO:0007616 | PO:PO:0008019 | PO:PO:0009005 |
| PO:PO:0009006 | PO:PO:0009009 | PO:PO:0009010 | PO:PO:0009025 | PO:PO:0009029 | PO:PO:0009030 |
| PO:PO:0009031 | PO:PO:0009032 | PO:PO:0009046 | PO:PO:0009047 | PO:PO:0009052 | PO:PO:0020030 |
| PO:PO:0020038 | PO:PO:0020100 | PO:PO:0020137 | PO:PO:0025022 | PO:PO:0025281 | PANTHER:PTHR31791 |
| PANTHER:PTHR31791:SF2 | UniProt:Q940H8 | UniParc:UPI00000A81B5 | SEG:seg | : | : |
Description
FRL4BFRIGIDA-like protein 4b [Source:UniProtKB/Swiss-Prot;Acc:Q940H8]
Coordinates
chr4:-:8520782..8524217
Molecular Weight (calculated)
59367.1 Da
IEP (calculated)
7.148
GRAVY (calculated)
-0.413
Length
532 amino acids
Sequence
(BLAST)
(BLAST)
001: MESSPDPGEL IKSSQPSFFE FQKQASLMTS CNLLWKELSE HFTSMEQNLM KKSEALRQMI ETLDNQTQSS IELLKHREVT IDHSVEIAEG KVEERVRAAL
101: DSLEKARDCG DEDTGEVDDG DGLLSALKSL CLKMDARGFW GFVIARKKEL ENLRSQIPVA LVDCVDPPKL VLEAVSEVFP VDKRGGGEKV SNDFGWACVV
201: ILESLIPVMV DPVMGKSRLL VTPSVKEKAK EIAETWKASL EERGGIENVK TPDVHTFLQH LVTFGIVKKD DLALYRKLVV GSAWRKQMPK LAVSVGLGDQ
301: MPDMIEELII RGQQLDAVHF TFEVGLVHLF PPVPLLKAYL RDAKKATALI TDDSNNSGRS AHLVARKEQS ALRAVLKCIE EYKLEEEFPP ENLKKRLDQL
401: EKTKTEKRKP AVIPANKRTR ASYSGPMPPA KAGRITNAYV SSFPPPPPTF IRSQSHSPQY GVPAYTTSPP TIYSNRSPPY QYSPEAVHGS YQTSPVSYPT
501: AYGTYCSPVA APPPPVYHPH PHHHHHIQHA YY
101: DSLEKARDCG DEDTGEVDDG DGLLSALKSL CLKMDARGFW GFVIARKKEL ENLRSQIPVA LVDCVDPPKL VLEAVSEVFP VDKRGGGEKV SNDFGWACVV
201: ILESLIPVMV DPVMGKSRLL VTPSVKEKAK EIAETWKASL EERGGIENVK TPDVHTFLQH LVTFGIVKKD DLALYRKLVV GSAWRKQMPK LAVSVGLGDQ
301: MPDMIEELII RGQQLDAVHF TFEVGLVHLF PPVPLLKAYL RDAKKATALI TDDSNNSGRS AHLVARKEQS ALRAVLKCIE EYKLEEEFPP ENLKKRLDQL
401: EKTKTEKRKP AVIPANKRTR ASYSGPMPPA KAGRITNAYV SSFPPPPPTF IRSQSHSPQY GVPAYTTSPP TIYSNRSPPY QYSPEAVHGS YQTSPVSYPT
501: AYGTYCSPVA APPPPVYHPH PHHHHHIQHA YY
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.